Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1230 ATGCAAGAAGAAGATGATGATTTCTTCAACCAATGCCAAAATATTGAGACATTGGATTATGAAGATGAGATGATGTTTAGAGAGATGATGCATCAACCAGCTTTCTCATCCAACCTTGTAATCAATAACAACAACTTCAATGGTGCACCACAAAAACTGGCCACTGCCACCTCTCCAATGGCCTACATTCTTTCTTTTGATGACTCCACCGTCGTCTCGGCCGCCGGACAAACCTATGGTGGAAAACAACCCTATCATGATGCATTAATAAGTGGTGGTGGTGGTGGTAGTACACTTCCTCCTTCAAAAGAAAAAGTAGAGATATTAGAACCAAGTAGGGTTCATCAAACAACAAGGAAGGTTAGAAGCTCTTCAGAAACATTAGACCATATAGTGGCTGAGAGAAAGAGGAGAAGGGAACTCACTGAGAGATTCATAGCACTTTCAGCAACAATACCAGGTTTGAAGAAGATTGACAAGTCCACTATACTTAGTGAAGCAATCATTCATGTGAAACAACTTCAACAACGTGTAAGAGAATTAGAAGAACAAAGCAAGAAGATAAGTGTAGAATCAGTGTTATACATTCAGAAATCTCACATTGCCACTGAAAAATGCATCACATTTGGTGCAATAATGAATAGAGAGAATGAAGCACTTCCTACAGTGGAAGCAAGAGTATTGAAGAAAGAAGTGCTCATCAGAATACACAGTGAGAAACAAAGTGACATAGTGCTCAAAATACTGAGCCATTTAAGAAGTTTTGATCTCTCCACAATCAGCAATAGTGTCTTGCCATTTGGGAGTTCTAGAGTAAGACTTCTCTCCATTAATAGAGAGACAAGTACCCAAAAAAATCAAAGAAAGTGGAAGATGCAATGTCACTTTTGCCCTTATTTAAAAGATCCTACTCCTCTTGATATTAGTGTCATTGCTCAGGTACATAACATCAATCTTTTGGACAAATAA 969 0.3839 MQEEDDDFFNQCQNIETLDYEDEMMFREMMHQPAFSSNLVINNNNFNGAPQKLATATSPMAYILSFDDSTVVSAAGQTYGGKQPYHDALISGGGGGSTLPPSKEKVEILEPSRVHQTTRKVRSSSETLDHIVAERKRRRELTERFIALSATIPGLKKIDKSTILSEAIIHVKQLQQRVRELEEQSKKISVESVLYIQKSHIATEKCITFGAIMNRENEALPTVEARVLKKEVLIRIHSEKQSDIVLKILSHLRSFDLSTISNSVLPFGSSRVRLLSINRETSTQKNQRKWKMQCHFCPYLKDPTPLDISVIAQVHNINLLDK 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1230 322 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 128 192 IPR036638 GO:0046983
Lal20g1230 322 Pfam Helix-loop-helix DNA-binding domain 130 175 IPR011598 GO:0046983
Lal20g1230 322 SMART finulus 131 180 IPR011598 GO:0046983
Lal20g1230 322 PANTHER BHLH TRANSCRIPTION FACTOR 10 276 - -
Lal20g1230 322 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 10 276 - -
Lal20g1230 322 Coils Coil 164 191 - -
Lal20g1230 322 Gene3D - 124 196 IPR036638 GO:0046983
Lal20g1230 322 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 125 174 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1230 Lal-Chr20 16752057 16753998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1230 129 270 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 39.623 1.64e-30 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal20g1230 HLH 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1230 - - gmx:100777846 274.633