Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1226 ATGGGAAAGAAGGTATGTGTAAGTGGTGGTGGTGGATTTGTAGCATCTTGGCTTATTAAGCTTCTTCTTTCCAAAGGTTACATTGTTCATGCCACTGTTAGACAACCTGGTAATGAGAAATATGAGCACTTGCTGAAATTGGAGAGAGCTTCTGAGAACCTTAAACTCTTCAAGGCAGATCTCTTAAATTATGAATCTCTTTACTCAACAATTGTTGGATGCAATGCTGTTTTTCATGTTGCTAGCCCTGTCCCTTCAACAACTGTAGAAGTCATTGAGCCTGCAGTGAAAGGAACTAAAAATGTACTTGAAGCATGTCTTGAAGCTAAAGTAGAACGTGTTGTGCTCGTATCTTCTGTAGCTGCTATTTTCATGAACCCAAATTTGCCAAATGATAAAGTGATTGATGAGTCCTGTTGGTCTGATAAAGAGTACTGCAGAAAAACCGAGAACTGGTATTGTTTTTCCAAGACAGAGGCGGAGGAGCAGGCGCTGGACTTTGCAAAAAGAACCGGGCTTTCTGTAGTAAGCATTTGTCCTTCCCTTATATTCGGGCCAATTTTACGGTCAACTACTGTTAATGCAAGTAGCTTGGTTCTCCTCAACATTTTAAAAGGTTGCGAGTCATTGGAGGATAAGCATCGGTGGATAGTCGATGTGCGAGATCTAGTTGATGCGATACTTTTGGCATATGAGAAGCCAGAGGCAGAAGGAAGATACTTATGTGCTTCACACCCTATCAAGACAAAGGATTTGGTGGAAAAATTGAAGAGCATATATCCCAATAACAACTACCCTACAAACTTTATCGAGGTGGATGATTACACAAGGTTGAGCTCAGAGAAACTGCAAAAGTTGGGTTGGAGATACAGGCCATTAGAGGAAACACTCATTGATTCTGTTGAGAGCTACATAGAGGCTGGGCTACTAGAATCAAAATAA 942 0.4098 MGKKVCVSGGGGFVASWLIKLLLSKGYIVHATVRQPGNEKYEHLLKLERASENLKLFKADLLNYESLYSTIVGCNAVFHVASPVPSTTVEVIEPAVKGTKNVLEACLEAKVERVVLVSSVAAIFMNPNLPNDKVIDESCWSDKEYCRKTENWYCFSKTEAEEQALDFAKRTGLSVVSICPSLIFGPILRSTTVNASSLVLLNILKGCESLEDKHRWIVDVRDLVDAILLAYEKPEAEGRYLCASHPIKTKDLVEKLKSIYPNNNYPTNFIEVDDYTRLSSEKLQKLGWRYRPLEETLIDSVESYIEAGLLESK 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1226 313 Coils Coil 47 67 - -
Lal20g1226 313 CDD FR_SDR_e 5 288 - -
Lal20g1226 313 Gene3D - 1 313 - -
Lal20g1226 313 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 3 310 - -
Lal20g1226 313 Pfam NAD dependent epimerase/dehydratase family 5 237 IPR001509 -
Lal20g1226 313 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 305 IPR036291 -
Lal20g1226 313 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 3 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1226 Lal-Chr20 16737808 16741015 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1226 4 311 Monolignol Biosynthesis Gene Families AT2G33590 61.146 8.13e-140 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1226 - - mtr:MTR_4g009040 480.33