Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1221 ATGGGTTCAGAAAAGGTTATATCTTTTTGGTCGTGTTGTGGAAATTTTGATGGCAAAAAGCGAGGGAAAAAACAAGCTTCGTGGCGGGTGTTTTCTTTGAAGGAATTACACTCTGCTACAAATAAATTCAACTATGATAACAAGCTCGGAGAAGGGGGATTCGGCAGTGTTTATTGGGGCCAACTTTGGGATGGTTCGCAAATTGCAGTGAAAAGATTGAAAGTTTGGAGCAACATAGCGGATACAGAATTTGCTGTCGAAGTTGAAATATTGGCAAGAGTGCAACACAAGAATCTTCTAAGTCTCCGTGGCTATTGTGCTGAAGGACAAGAACGATTAATTGTATATGACTATATGCCAAATTTGAGCCTGCAATCTCATCTTCATGGACAGCACTCGGCAGAATGCCTTCTCGGCTGGAACCGACGGATGAAAATTGCAATTGGGTCTGCTGAGGGAATTCTATATCTTCACCACCAAGCAACACTACATATCATCCACAGAGATATTAAAGGAAGCAATGTACTGCTCGATTCAGATTTCAAGGCACGTGTCGCTGATTTTGGTTTCGCTAAGTTGGTCCCTGATGACGCAACGAATGTGACTACAAAAGTTAAGAGTACGCATGGCTACCTTGTTCCGGAATATGCTTTGTTAGGTAAAGCAAATACGAGTTGTGATGTCTTTGATTTTGGAATTCTCCTTCTAGAACTCGTCAGTGGCAGAAAACCGATAGAAAAGGTTAGTTCCACGGTGAAACGATCGATATTTGATTGGGCACTGCTATTGGTTTGTGAGAAGAAATATAGTGAAGTTGTTGATCCAAGACTAAATGGTGAGTATGTGGAGGAAGAGGTTAAAAGAGTTGTTCTTGTTGCAATGATATGTGCTCAAAGTCAACCTGAGAAAAGACCTACCATGCTTGATGTGGTAGAGTTACTGAAGGGAAAATCTAAAGAGAAAATTTCTCAGATAGAGAATAATGAAATGTTTAGAACCACTCCTATAGGAGAATACAATGCTGGTGCATCAGTGGCTGAAGACAGTTCAGCAGAAAAAGAATTAAAACATGAGTTGGAAGAGAATACTGAGCGGCTATAA 1101 0.406 MGSEKVISFWSCCGNFDGKKRGKKQASWRVFSLKELHSATNKFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSNIADTEFAVEVEILARVQHKNLLSLRGYCAEGQERLIVYDYMPNLSLQSHLHGQHSAECLLGWNRRMKIAIGSAEGILYLHHQATLHIIHRDIKGSNVLLDSDFKARVADFGFAKLVPDDATNVTTKVKSTHGYLVPEYALLGKANTSCDVFDFGILLLELVSGRKPIEKVSSTVKRSIFDWALLLVCEKKYSEVVDPRLNGEYVEEEVKRVVLVAMICAQSQPEKRPTMLDVVELLKGKSKEKISQIENNEMFRTTPIGEYNAGASVAEDSSAEKELKHELEENTERL 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1221 366 SUPERFAMILY Protein kinase-like (PK-like) 25 314 IPR011009 -
Lal20g1221 366 SMART serkin_6 43 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g1221 366 MobiDBLite consensus disorder prediction 349 366 - -
Lal20g1221 366 PANTHER OS01G0750732 PROTEIN 11 358 - -
Lal20g1221 366 ProSiteProfiles Protein kinase domain profile. 43 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g1221 366 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Lal20g1221 366 MobiDBLite consensus disorder prediction 344 366 - -
Lal20g1221 366 Gene3D Phosphorylase Kinase; domain 1 15 118 - -
Lal20g1221 366 Gene3D Transferase(Phosphotransferase) domain 1 119 333 - -
Lal20g1221 366 Pfam Protein kinase domain 44 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g1221 366 CDD STKc_IRAK 49 316 - -
Lal20g1221 366 ProSitePatterns Protein kinases ATP-binding region signature. 49 71 IPR017441 GO:0005524
Lal20g1221 366 PANTHER BNAA05G14800D PROTEIN 11 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1221 Lal-Chr20 16693009 16698686 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1221 31 340 Trihelix Transcription Factor Family AT1G70460 46.688 4.52e-88 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Lal20g1221 Pkinase 8.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1221 - - gmx:100788153 563.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1221 20 16693009 16698686 Lal20g1221 20 16693009 16698686 ECH
Lal20g1221 20 16693009 16698686 Lal1g1249 1 13763718 13769434 LSH
Lal8g0204 8 1373865 1379944 Lal20g1221 20 16693009 16698686 PCT
Lal20g1221 20 16693009 16698686 Lal8g0204 8 1373865 1379944 PCT