Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1210 ATGGCACAAATTCTGCTTCATGGGAATCTTCATGCTACCATCTTTGAGGTGGATAGGCTCAAATCTGGTGGTGGTGGTGGTGGCAATTTTTTGAGCATGATCAAGCAGAACATTGAGGAGAAAGTTGGTATTGGAAAAGGAGTTACTAAACTCTATGCAACCATTGATCTGGAGAAGGCAAGAGTAGGAAGGACCAGAATTATTGAAAATGAAGAAAATAATCCGAAATGGTACGAGTCTTTTCACATTTACTGTGGCCACTCGGCTTCAAACATTATATTCACTGTGAAAGATGATAATCCTATTGGAGCATCTTTAATTGGAAGAGCATATGTACCTGTCGGGGAGGTCTTGGATGGTGAGGAAATAGATAGATGGGTTGAACTCTTGGACGAGGATAAAAATCCAATACAAGAGGGTTCAAAGATCCATGTGAAGCTTCAATATTTTGATGTCGCGAAAGACCTCAACTGGGCTCGAGGCATTAGGAGTGCTAAATTTCCCGGAGTTCCCTATACTTTCTTCTCGCAAAGACAAGGATGCAAGGTTACTCTTTACCAAGATGCTCATGTGCCTGATAACTTTGTCCCTAAAATACCACTTTCTGGAGGCAAGGCTTATGAACCTCATAGGTGTTGGGAGGATATTTTTGATGCAATCACCAATGCGAAACACTTAATATACATTACTGGCTGGTCTGTGTATACTGAGATTTCCTTGATAAGGGATTCTAGGAGGCCAAAGCATGGCGGAGACGTAACACTTGGTGAGCTTCTCAAGAAAAAGGCAAGTGAAGGAGTCAGGGTTTTGATGCTTGTTTGGGATGATAGAACATCAGTCAATTTGTTGAAAAAAGATGGATTGATGGCTACTCATGATGAAGAAACTGCGCAGTTCTTCGATGGCACTGATGTGCACTGTGTTTTATGTCCTCGCAATCCTGATAATGGCGGTAGCATTGTACAAGATTTACAAATTTCTACCATGTTTACTCATCACCAGAAGATTGTGGTGGTGGACAGTGAGTTGCCGAGTGGAGTGTCGGATAGGCGAAGAATTGTGAGTTTTGTTGGAGGTATTGACCTCTGTGATGGAAGATATGATACAGCCTTCCACTCACTTTTCCGAACCCTTGACACAGCACACCATGATGATTTTCATCAGCCTAACTTCCCCGGTGCTGATATCACAAAAGGTGGTCCTAGGGAACCATGGCATGATATCCACTCCCGGCTTGAAGGACCAATAGCATGGGATGTTTTGTTTAACTTTGAGCAGAGATGGAGGAAACAAGGTGGGAAGGATTTACTCGTTTCACTGAGAGAGCTTGAAGATGTCTTTATTCCCCCATCCCCGGTTACGTTTCCCGAGGATCATGAAACATGGAATGTTCAATTATTTAGATCTATTGATGGTGGTGCTGCTTTTGGGTTCCCAGAGACTCCTGAAGAAGCTGCTAGAGCTGGATTGGTTAGTGGGAAGGATAATATCATCGATCGCAGTATTCAAGATGCTTACATTAATGCTATTCGGCGTGCAAAGAACTTCATCTATATTGAAAATCAGTATTTCCTTGGAAGCTCCTTTGCCTGGGCTCCTGAAGATATTAAGCCTGAAGATATTGGTGCTTTGCATTTAATCCCAAAGGAACTTTCACTTAAGATTGTTAGTAAGATTGAAGCCGGGGAAAGGTTCACTGTGTATGTTGTGGTCCCGATGTGGCCGGAGGGTGTCCCAGAAAGTGCATCGGTTCAGGCAATATTGGACTGGCAAAGAAGAACATTGGAGATGATGTACAAGGATGTTGTTCAGGCACTCAGGGCTAAGGGAAGTGATGAAGATCCTAGGAACTATTTGACATTCTTCTGCCTCGGTAATCGTGAAGTGAAGAAACAAGGTGAGTATGAGCCTTCAGAAAAACCAGAGGAAGATTCAGATTATCTTAGAGCCCAAGAAGCTCGGCGCTTCATGATTTATGTTCATACCAAGATGATGATAGTTGATGATGAGTACATAATCATTGGATCTGCCAACATCAACCAGAGATCAATGGATGGTGCTCGGGACTCTGAGATCGCCATGGGTGCTTATCAGCCCTATCACTTGGCTACTAGGCAGCCTGCGCGCGGTCAGATCCACGGTTTCCGCATGTCATTGTGGTACGAGCACCTCGGTATGCTTCATGAGTCCTTCGACAACCCTGAAAATGAAGAATGTATTAGTAAGGTAAACCAGATTGCTGACAAGTATTGGGATCTCTACTCTAATGAGTCACTTGAGCGTGACCTTCCCGGCCACCTCCTCCGCTATCCTATCGGGGTTGCCAGCGAAGGTGATATCACTGAATTACCAGGATTTGAGTTCTTCCCGGATACCAAGGCTCGCATTCTCGGCGGCAAAGTTGACTACATGCCACCAATCCTTACCACTTAG 2433 0.441 MAQILLHGNLHATIFEVDRLKSGGGGGGNFLSMIKQNIEEKVGIGKGVTKLYATIDLEKARVGRTRIIENEENNPKWYESFHIYCGHSASNIIFTVKDDNPIGASLIGRAYVPVGEVLDGEEIDRWVELLDEDKNPIQEGSKIHVKLQYFDVAKDLNWARGIRSAKFPGVPYTFFSQRQGCKVTLYQDAHVPDNFVPKIPLSGGKAYEPHRCWEDIFDAITNAKHLIYITGWSVYTEISLIRDSRRPKHGGDVTLGELLKKKASEGVRVLMLVWDDRTSVNLLKKDGLMATHDEETAQFFDGTDVHCVLCPRNPDNGGSIVQDLQISTMFTHHQKIVVVDSELPSGVSDRRRIVSFVGGIDLCDGRYDTAFHSLFRTLDTAHHDDFHQPNFPGADITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDLLVSLRELEDVFIPPSPVTFPEDHETWNVQLFRSIDGGAAFGFPETPEEAARAGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSFAWAPEDIKPEDIGALHLIPKELSLKIVSKIEAGERFTVYVVVPMWPEGVPESASVQAILDWQRRTLEMMYKDVVQALRAKGSDEDPRNYLTFFCLGNREVKKQGEYEPSEKPEEDSDYLRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGAYQPYHLATRQPARGQIHGFRMSLWYEHLGMLHESFDNPENEECISKVNQIADKYWDLYSNESLERDLPGHLLRYPIGVASEGDITELPGFEFFPDTKARILGGKVDYMPPILTT 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1210 810 Pfam Phospholipase D Active site motif 328 366 IPR001736 GO:0003824
Lal20g1210 810 Pfam Phospholipase D Active site motif 657 683 IPR001736 GO:0003824
Lal20g1210 810 Pfam Phospholipase D C terminal 729 799 IPR024632 -
Lal20g1210 810 SMART pld_4 328 366 IPR001736 GO:0003824
Lal20g1210 810 SMART pld_4 656 683 IPR001736 GO:0003824
Lal20g1210 810 Pfam C2 domain 41 129 IPR000008 -
Lal20g1210 810 SMART C2_3c 9 126 IPR000008 -
Lal20g1210 810 SUPERFAMILY Phospholipase D/nuclease 154 438 - -
Lal20g1210 810 CDD PLDc_pPLDalpha_2 494 703 - -
Lal20g1210 810 PIRSF PLD_plant 1 810 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Lal20g1210 810 Gene3D C2 domain 8 159 IPR035892 -
Lal20g1210 810 Gene3D Endonuclease Chain A 480 702 - -
Lal20g1210 810 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 656 683 IPR001736 GO:0003824
Lal20g1210 810 CDD C2_plant_PLD 2 150 - -
Lal20g1210 810 PANTHER PHOSPHOLIPASE D 2 810 IPR015679 -
Lal20g1210 810 PANTHER PHOSPHOLIPASE D 2 810 - -
Lal20g1210 810 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 328 366 IPR001736 GO:0003824
Lal20g1210 810 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 8 152 IPR035892 -
Lal20g1210 810 ProSiteProfiles C2 domain profile. 1 127 IPR000008 -
Lal20g1210 810 SUPERFAMILY Phospholipase D/nuclease 454 739 - -
Lal20g1210 810 Gene3D Endonuclease Chain A 202 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1210 Lal-Chr20 16604689 16608969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1210 1 810 Phospholipase D Gene Family (Wang group) AT3G15730 82.737 0.0 1415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1210 K01115 - gmx:100786410 1528.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1210 20 16604689 16608969 Lal1g1258 1 13840645 13844888 LSH
Lal20g1210 20 16604689 16608969 Lal18g0208 18 1730179 1734569 LSH
Lal25g0255 25 1742980 1746842 Lal20g1210 20 16604689 16608969 PCT
Lal20g1210 20 16604689 16608969 Lal25g0255 25 1742980 1746842 PCT