Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1209 ATGGTTCACCCCAAGAAATTCAGAGGTGTCAGGCAACGCCATTGGGGTTCATGGGTTGCTGAGATTCGTCATCCATTATTGAAAAGAAGGGTATGGCTTGGAACATTTGAGACAGCAGAAGAAGCAGCTAGAGCATATGATGAAGCAGCAATTTTGATGAGTGGAAGAAATGCAAAAACAAATTTCCCAGTTTCTGATAAACCAAACAATGAAAATAATAATAACAATTACACAACAACTTCATCATCATCATCTTCTTCTTCTTCTAATAAATCATTATCTGAAGTTGTTAGTGCAAAGCTTAGAAAATGTTGCAAATCACCATCACCTTCACTCACTTGTCTAAGGCTTGATACTGAGAATTCTCACATTGGTGTGTGGCAAAAAAGAGCAGGTTCTCGTTCTGATTCAAATTGGATCATGATGGTTGAGTTAGAAAGGAAGAATAATTCAATAGGAGTAGTTAATTCTGATAATGATTCAGAATTGCAACTTCAAGAGCATGAAATAATGCAAGAAAAGGTAATAAAACCAGAAGAAAATAATATTAATATTAATAATAATAATACTAATGGAGGGTTGGATGAAGAGGAAAAAATTGCATTGCAAATGATAGAGGAACTTCTTAATAGGAATTAA 639 0.3427 MVHPKKFRGVRQRHWGSWVAEIRHPLLKRRVWLGTFETAEEAARAYDEAAILMSGRNAKTNFPVSDKPNNENNNNNYTTTSSSSSSSSSNKSLSEVVSAKLRKCCKSPSPSLTCLRLDTENSHIGVWQKRAGSRSDSNWIMMVELERKNNSIGVVNSDNDSELQLQEHEIMQEKVIKPEENNININNNNTNGGLDEEEKIALQMIEELLNRN 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1209 212 MobiDBLite consensus disorder prediction 61 90 - -
Lal20g1209 212 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Lal20g1209 212 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Lal20g1209 212 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Lal20g1209 212 PIRSF PTI6 2 108 IPR017392 GO:0003700
Lal20g1209 212 PIRSF PTI6 148 191 IPR017392 GO:0003700
Lal20g1209 212 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 212 - -
Lal20g1209 212 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 212 - -
Lal20g1209 212 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Lal20g1209 212 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Lal20g1209 212 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Lal20g1209 212 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Lal20g1209 212 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1209 Lal-Chr20 16585324 16587101 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1209 1 212 AP2-EREBP Transcription Factor Family AT1G15360 61.086 1.54e-80 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal20g1209 AP2 1.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1209 - - gmx:100785898 249.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1209 20 16585324 16587101 Lal18g0207 18 1713066 1714479 LSH