Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1208 ATGGGTGAATTGAAGGACAATGAAGCTTACGAGGAAGAGCTCATCGACTACGAAGAGGAAGATGAAAAAGCCCTTGATTCTTCTAAACCCGCTACTGAATCTGGCAAAAAGGGTTATGTTGGGATCCACAGTTCGGGATTTAGAGACTTCCTGTTGAAACCTGAGCTGCTTCGAGCCATTGTGGATTCGGGATTCGAGCATCCTTCAGAAGTGCAACACGAATGTATCCCTCAAGCAATTCTAGGAATGGATGTCATTTGCCAAGCAAAATCTGGGATGGGAAAGACTGCGGTTTTTGTTCTTTCAACACTTCAGCAAATTGATCCTGTTGCTGGTCAAGTTGCTGCTCTTGTTTTGTGTCACACAAGAGAACTAGCTTATCAGATTTGCCATGAATTTGAGAGGTTCAGCACATATCTTCCGGATATAAAAGTTGCTGTTTTCTACGGTGGTGTCAACATCAAGGTTCACAAAGACTTGCTCAACAATGAATGTCCTCATATTGTTGTTGGAACACCTGGGAGGATTCTTGCTCTAGCTAGAGACAAGGACCTTGGTTTGAAGAATGTGAGGCATTTTATACTTGACGAGTGTGACAAGATGCTAGAATCACTTGACATGAGAAGAGATGTGCAAGAGATTTTTAGATTAACTCCCCATGATAAGCAAGTAATGATGTTTTCAGCTACACTCAGCAAAGAGATCCGACCTGTTTGCAAGAAATTTATGCAAGATCCGATGGAAATTTATGTAGATGATGAGGCCAAATTGACTCTTCATGGTCTCGTTCAGCACTACATTAAATTGCAAGAGTCAGAGAAGAATCGTAAGTTGAATGATCTTCTTGATGCACTGGACTTCAACCAAGTCGTTATCTTTGTCAAAAGTGTCAGCAGAGCAGCAGAGTTGAACAAGTTGCTTGTGGAGTGCAACTTCCCATCAATCTGCATACATTCTGGAATGTCACAGGAAGAAAGATTGAAACGGTACAAGGGCTTCAAAGAAGGGAAGCAAAGGATTCTTGTAGCAACAGATTTAGTAGGAAGGGGAATTGACATAGAACGTGTTAATATAGTTATCAACTATGACATGCCTGATTCTGCAGATACCTACCTGCACAGGGTGGGAAGAGCTGGTAGATTTGGCACCAAGGGGCTTGCAATTACATTTGTTTCTTCTGCCTCTGACTCTGAAGTTCTCAATCAGGTGCAATCAAGGTTTGAGGTTGATATAAAGGAGCTTCCTGAGCAAATTGACACTTCCACATATATTTATGCACAAAATTCATCAGAATTGGAATGCCAAACTGATGGAGTTTTAGGTCGATTAGGAGTGTGGATGCCAAGGATATACCCACTTATGCATTGA 1368 0.4167 MGELKDNEAYEEELIDYEEEDEKALDSSKPATESGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVAALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKVHKDLLNNECPHIVVGTPGRILALARDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFRLTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLQESEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSEVLNQVQSRFEVDIKELPEQIDTSTYIYAQNSSELECQTDGVLGRLGVWMPRIYPLMH 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1208 455 MobiDBLite consensus disorder prediction 1 35 - -
Lal20g1208 455 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 400 IPR027417 -
Lal20g1208 455 CDD DEADc_DDX39 44 251 - -
Lal20g1208 455 CDD SF2_C_DEAD 262 391 - -
Lal20g1208 455 Pfam Helicase conserved C-terminal domain 275 382 IPR001650 -
Lal20g1208 455 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 26 421 - -
Lal20g1208 455 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN 26 421 - -
Lal20g1208 455 SMART helicmild6 301 382 IPR001650 -
Lal20g1208 455 Gene3D - 258 426 IPR027417 -
Lal20g1208 455 Coils Coil 7 27 - -
Lal20g1208 455 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 76 249 IPR014001 -
Lal20g1208 455 Gene3D - 41 257 IPR027417 -
Lal20g1208 455 SMART ultradead3 64 265 IPR014001 -
Lal20g1208 455 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 277 422 IPR001650 -
Lal20g1208 455 Pfam DEAD/DEAH box helicase 70 235 IPR011545 GO:0003676|GO:0005524
Lal20g1208 455 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 45 73 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1208 Lal-Chr20 16564462 16571159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1208 1 424 Eukaryotic Initiation Factors Gene Family AT5G11200 83.262 0.0 748
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1208 K12812 - gmx:100785358 803.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1208 20 16564462 16571159 Lal1g1259 1 13849054 13854465 LSH
Lal20g1208 20 16564462 16571159 Lal18g0054 18 436332 438318 LSH