Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1195 ATGGACGATAACAATCCGGAACGAAATAGCAACACACATACCGATCATTATCCTTTGCTAATGGATAAGCTGGAAACTAACAATGTTCGTGACCACATCATTGATATTACAAGAAATGATGAAGGTTCGTCAAGCTCATCTCATAATGCTCAACACTCTGGAATGCATTTACTGCAGAATGATGATGAACTAAATGGCAGCACACAAGTCCCCACTCATCAAAGATCTTCTTTTTCTGCATCCAGATATAATTCTAGAAATTCCTCGTCGTCAAGAAGTGACGAGTATGGTCATCACAGAAGGAGTCCACTAAATTCTGGACTGTGGATTTCTGTGGAGCTTGTTGTCACTCTGAGTCAAATCATAGCATCTATTGTTGTCTTGTCAATATCGAGAAATGAAAACCCTCAAGCACCACTATTTGCATGGATTGTGGGTTATGCATCTGGTTGTGTTGCTACCCTTCCTCTCCTTTACTGGCGATATCGAAATCATAATCAAAGTATTGAAGAAGATACCACTCAACCATCTCAAGGATCTTTTGAAAGAAACCCTCCAGAACCTTCTTCATATACTGCCATCTCTGTTTCTCATGTTTCAGATGAAGAAAATAATCGTGCTACTGAATCAGCTACAGGAAGTGCTAGAATTCCTGGACTTTTTAATTCTAGGTTTGATAGATTAGTAGAGCATTTCAAGATGGTATTGGATTGCTTCTTTGCAGTTTGGTTTGTTGTAGGCAATGTGTGGATTTTCGGTGGTCACACTTCTCCTTCTGATGCTCCGAAATTGTATAGGTTATGTATAGTGTTTCTTACCTTCAGCTGCATCGGATATGCCATGCCATTTATACTATGTGCAACAATTTGTTGCTGCCTACCTTGCATAATTTCTATTTTGGGCATTCGGGAGGATTTTTCTCAAAATAGGGGAGCCTCGGCCGAATCAATTAATGCTCTGCCAATCTACAAGTTCAAAATGAAGGAAAATGAAAACAGTGATGTTCATGATGTCGATACTGCAATAGATGAAGGTGGTGTTCTGGCTGCTGGAACCGAAAAGGAACGGTTGATATCCGGAGAAGATGCTGTTTGTTGCGTTTGCTTGGCGAAATATGTAGATGATGACGAGCTTCGGGAGATGCCTTGCTTTCACATCTTTCACGTCGAGTGTATTGACAAATGGTTAAAGATAAATGCATCATGTCCTCTTTGTAAAAGTGAAGTTGGCACAAGTAATGAACAGTCAACTTCAGCTACGGACTCCGGCGGTCAGCAGTAG 1281 0.4059 MDDNNPERNSNTHTDHYPLLMDKLETNNVRDHIIDITRNDEGSSSSSHNAQHSGMHLLQNDDELNGSTQVPTHQRSSFSASRYNSRNSSSSRSDEYGHHRRSPLNSGLWISVELVVTLSQIIASIVVLSISRNENPQAPLFAWIVGYASGCVATLPLLYWRYRNHNQSIEEDTTQPSQGSFERNPPEPSSYTAISVSHVSDEENNRATESATGSARIPGLFNSRFDRLVEHFKMVLDCFFAVWFVVGNVWIFGGHTSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISILGIREDFSQNRGASAESINALPIYKFKMKENENSDVHDVDTAIDEGGVLAAGTEKERLISGEDAVCCVCLAKYVDDDELREMPCFHIFHVECIDKWLKINASCPLCKSEVGTSNEQSTSATDSGGQQ 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1195 426 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 7 420 - -
Lal20g1195 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 350 423 IPR013083 -
Lal20g1195 426 PANTHER PROTEIN, PUTATIVE-RELATED 7 420 - -
Lal20g1195 426 MobiDBLite consensus disorder prediction 61 102 - -
Lal20g1195 426 Pfam Ring finger domain 365 406 IPR001841 -
Lal20g1195 426 MobiDBLite consensus disorder prediction 407 426 - -
Lal20g1195 426 ProSiteProfiles Zinc finger RING-type profile. 365 406 IPR001841 -
Lal20g1195 426 MobiDBLite consensus disorder prediction 61 91 - -
Lal20g1195 426 MobiDBLite consensus disorder prediction 171 192 - -
Lal20g1195 426 SUPERFAMILY RING/U-box 356 411 - -
Lal20g1195 426 SMART ring_2 365 405 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1195 Lal-Chr20 16445382 16450435 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1195 1 417 C3H Transcription Factor Family AT1G80400 54.079 2.06e-162 461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1195 20 16445382 16450435 Lal20g1195 20 16445382 16450435 ECH