Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1191 ATGAGTGTGGTCGGATTTGATTTCGGTAATGAAAGCTGCATTGTTGCGGTTGCGAGGCAAAGGGGTATTGATGTTGTGCTCAACGATGAGTCCAAGCGTGAAACGCCTGCTATTGTATGCTTTGGTGATAAGCAACGTTTCATCGGCACTGCTGGGGCTGCAACCACTATGATGAACCCCAAGAATTCCATCTCACAGATTAAGAGGCTAATTGGTAAACAGTTTTCTGATCCCGAATTGCAGCGGGATCTCAAGTCATTGCCCTTTCATGTCACTGAAGGCCCTGATGGATATCCATTGATTCATGCACGCTACTTGGGTGAAGCTAAAGCATTTACACCAATCCAAGTCTTTGGAATGATGTTGTCGAATCTTAAAGAAATCGCTGAGAAAAATCTCAATGCGGTAGTTGTTGATTGTTGCATTGGAATCCCAGTTTATTTTACTGATCTTGAAAGGAGGGCAGTCTTGGACGCTGCCACAATTGCTGGTTTGTGCCCACTTCACCTCATTCATGAAACTACGGCGACTGCCTTGGCCTATGGGATTTACAAGACTGATCTTCATGAAACTGATCAGCTGAATGTTGCCTTTGTCGACATTGGACACGCAAGCATGCAAGTGTGCATTGCTGGCTTCAAAAAGGGGCAGCTTAAAATACTAGCTCATTCATATGATAGGTCTTTGGGTGGAAGGGATTTTGATGAGGTTTTGTTCCTTTACTTTGCTGCAAAATTCAAGGAGGAATACAAGATTGATGTTTTACAGAATGCCAGGGCGTGTCTAAGGCTCAGGGCTGCTTGTGAGAAGCTGAAGAAGGTGCTAAGTGCAAATCCTGAGGCACCTCTGAACATTGAGTGCTTAATGGATGAGAAGGATGTCAGGAGCTCCATCAAACGCGATGACTTTGAGCAACTAAGTCTTCCAATTTTGGAACGTGTAAAGGGACCTTTGGAGAAGGCACTTGCTGAAGCAGGCTTTACGGTTGAAGATGTACACATGGTTGAGGTGGTTGGTTCAGGTTCTCGTGTACCAGCTATAAATAAAATATTAACGGAGTTTTTCAGAAAGGAGCCTAGGCGGACAATGAATGCTAGTGAATGCGTTGCTAGGGGTTGCGCCTTGCAATGTGCAATTCTTAGTCCAACATTTAGAGTACGAGATTTTCAGGTCAACGAAAGCCTACCTTTCTCTATCTCTCTTTCATGGAAAGGTTCTGGTCCGGATGCACAAGATAGTGGTCCAGATAATCAGCTAAGCACAGTTGTTTTCCCCAAAGGCAATCCCATACCAAGTATCAAGGCACTTACATTCTACAGGTCAGGAACATTTTCTATTGATGTACAATATGGTGATATGAGTGGGCTACAAGCACCTGCTAAGATTAGCACATATACTATTGGTCCGTTCCAGACTACAAAAAGTGAAAGGGCAAAGGTTAAGGTTAGAGTCCGATTGAATCTGCATGGAATTGTATCTGTGGACCTGGCAACTCTGTTGGAAGAGGAAGAAGTTGAGGTGCCAGTTTCCAAAGAACCAGTGGCAGAAAATACCAAGATGGAAACTGATGAAACTCCCATCAATGCTGATGTACCTCCAACCTCCAATAACAGTGATGTTAACATGCAAGATGCAAAGGATAGTGATGGTACCACTGGTGTGGACAATGGTACTTCTGACAATGATACCAAGGTTCAGGCTCCCAAGAAAAAGGTTAAGAAAACGAACATTCCTGTAGCGGAGTTAGTTTATGGAGCAATGGCACCTGTGGATGTCCAGAAAGCTGTAGAGAAGGAGTTTGAAATGGCTTTGCAAGATCGTGTGATGGAAGAAACAAAAGACAAGAAAAATGCTGTTGAGGCTTATGTTTATGACATGAGAAACAAGCTTAATGACAAATATGAAGAGTTTGTGACTGCTCCAGAGAAAGAAGGTTTTGTTGCCAAACTTCAGGATGTGGAAGACTGGCTATATGAGGATGGTGAAGATGAAACTAAAGGTGTATATGTTGCCAAACTTGAAGAACTGAAAAAGCAAGGTGATCCCATTGAAGAGCGTTATAAAGAATATACGGAGAGGGGTACAGTAATTGATCAGTTCATCTATTGCATTAATAGTTACAGAGAAGCTGCAGTGTCAAATGATCCCAAATTTGACCATATTGATATCAACGAGAAACAGAAGGTCTTAACTGAATGTGTTGAAGCTGAGAACTGGCTGAGGCAGAAGAAGCAGCAGCAGGAATCACTTCCAAAATATGCCAACCCTGTACTCTTGTCAGCTGAAATAAGAAAGAAAGCTGAGGCTGTTGATAGGTTCTGTAAGCCGATTATGACAAAACCAAAGCCAGCCAAGCCAGCTACTCCACCAACACCAGCAACCCCACCATCACAGGGTGGTGAGCATCAGCAACCTCAAGGTAATGCTAATGCCAACACTAATGAGAATGCGGGTGCTACCGGTAGTGAGGTCCCACCGGAATCTACTGAACCAATGGAAACTGGTAAGTCAGAAAATGCAGGCTCGGTATAA 2532 0.4352 MSVVGFDFGNESCIVAVARQRGIDVVLNDESKRETPAIVCFGDKQRFIGTAGAATTMMNPKNSISQIKRLIGKQFSDPELQRDLKSLPFHVTEGPDGYPLIHARYLGEAKAFTPIQVFGMMLSNLKEIAEKNLNAVVVDCCIGIPVYFTDLERRAVLDAATIAGLCPLHLIHETTATALAYGIYKTDLHETDQLNVAFVDIGHASMQVCIAGFKKGQLKILAHSYDRSLGGRDFDEVLFLYFAAKFKEEYKIDVLQNARACLRLRAACEKLKKVLSANPEAPLNIECLMDEKDVRSSIKRDDFEQLSLPILERVKGPLEKALAEAGFTVEDVHMVEVVGSGSRVPAINKILTEFFRKEPRRTMNASECVARGCALQCAILSPTFRVRDFQVNESLPFSISLSWKGSGPDAQDSGPDNQLSTVVFPKGNPIPSIKALTFYRSGTFSIDVQYGDMSGLQAPAKISTYTIGPFQTTKSERAKVKVRVRLNLHGIVSVDLATLLEEEEVEVPVSKEPVAENTKMETDETPINADVPPTSNNSDVNMQDAKDSDGTTGVDNGTSDNDTKVQAPKKKVKKTNIPVAELVYGAMAPVDVQKAVEKEFEMALQDRVMEETKDKKNAVEAYVYDMRNKLNDKYEEFVTAPEKEGFVAKLQDVEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKEYTERGTVIDQFIYCINSYREAAVSNDPKFDHIDINEKQKVLTECVEAENWLRQKKQQQESLPKYANPVLLSAEIRKKAEAVDRFCKPIMTKPKPAKPATPPTPATPPSQGGEHQQPQGNANANTNENAGATGSEVPPESTEPMETGKSENAGSV 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1191 843 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 387 584 IPR029047 -
Lal20g1191 843 MobiDBLite consensus disorder prediction 509 571 - -
Lal20g1191 843 MobiDBLite consensus disorder prediction 774 843 - -
Lal20g1191 843 Gene3D - 38 113 - -
Lal20g1191 843 CDD HSPA4_like_NDB 2 381 - -
Lal20g1191 843 Gene3D - 5 374 - -
Lal20g1191 843 SUPERFAMILY Actin-like ATPase domain 195 380 IPR043129 -
Lal20g1191 843 Coils Coil 673 693 - -
Lal20g1191 843 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 709 787 IPR029048 -
Lal20g1191 843 PANTHER HEAT SHOCK 70 KDA PROTEIN 14 1 842 - -
Lal20g1191 843 Pfam Hsp70 protein 3 688 IPR013126 GO:0005524|GO:0140662
Lal20g1191 843 Gene3D Actin; Chain A, domain 4 230 313 - -
Lal20g1191 843 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 384 620 IPR029047 -
Lal20g1191 843 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 589 687 IPR029048 -
Lal20g1191 843 Gene3D - 186 360 - -
Lal20g1191 843 MobiDBLite consensus disorder prediction 797 823 - -
Lal20g1191 843 Gene3D - 589 697 IPR029048 -
Lal20g1191 843 PRINTS 70kDa heat shock protein signature 2 15 - -
Lal20g1191 843 PRINTS 70kDa heat shock protein signature 30 42 - -
Lal20g1191 843 PRINTS 70kDa heat shock protein signature 140 160 - -
Lal20g1191 843 PRINTS 70kDa heat shock protein signature 332 348 - -
Lal20g1191 843 PRINTS 70kDa heat shock protein signature 363 383 - -
Lal20g1191 843 SUPERFAMILY Actin-like ATPase domain 1 185 IPR043129 -
Lal20g1191 843 PANTHER HSC70CB, ISOFORM G-RELATED 1 842 - -
Lal20g1191 843 MobiDBLite consensus disorder prediction 521 563 - -
Lal20g1191 843 MobiDBLite consensus disorder prediction 782 796 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1191 Lal-Chr20 16380667 16386350 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1191 4 438 Calmodulin-binding Proteins AT1G16030 34.703 2.39e-84 281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1191 20 16380667 16386350 Lal20g1191 20 16380667 16386350 ECH
Lal20g1191 20 16380667 16386350 Lal1g1277 1 14145905 14152198 LSH
Lal20g1191 20 16380667 16386350 Lal18g0188 18 1545747 1551351 LSH
Lal10g1138 10 18113611 18119072 Lal20g1191 20 16380667 16386350 PCT
Lal8g0237 8 1598276 1603618 Lal20g1191 20 16380667 16386350 PCT
Lal20g1191 20 16380667 16386350 Lal10g1138 10 18113611 18119072 PCT
Lal20g1191 20 16380667 16386350 Lal8g0237 8 1598276 1603618 PCT