Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1190 ATGCCTAAGAAGATTCGAAAGTCCCTTCAAAACTACCTCTCAAAGATAAAAATTCCTAGATCAAAAGTCCATATACCCTCTAAACATAGGACCCTCTCGGTTAGAAAGCATAGAAGGACCTCTTCTTTTGTCAATGATGACATTAATCCTAAGGCTTCTTCTTTCTCCATAGATGACAAGAAAAACAATAATAAAGATGTTGAAGCTACACTAACGGATATTGATCATTTTCTTTTGGAGAATTTCAAGTCTTTGTACATTAAAGATGGTGAAGAAAAGGTTCATCATGAAGAAGAAGAAGAAGAAAGCCATGAAAATGGGAAATTTCCAAAGGTAGGACCCTTCCTATTCATGGGACCAAAAAGGGATCGTTATGGCTCTAATAGACACAACATGAAACGTGACTTCTCAGGCTCACTTGAGGATACTACCATAGGTGACCAAACAGGATCAAGTACAACCTCAACTACAACAACAAATGATTCATCATCTTCAAATACCTATTATGCAAAGGATCAAGAAATGGAACAAACTCAACCCAATAAATGCGTAGTGATTTTGGGGTGTTCACCAAACCCTTACAAGGACTTTCACAGATCCATGCAAAACATGGTTGAAGCAAGGCTCAAGAACAATGAAAATGTGGATTGGGAATTCATGGAACAACTCTTATTTTTTCACATGAACATGAATGAGAAAAAATCATACAAATTCATACTTTGTGCTTTTGTTGATTTGGTCACTGTAATGCGACCACCTTCAGAAACTACAACTTCAATGGTGAATCCACGAAGTGTTAGAACTGTTAGGAGTGGAAAGGAACTGAGGAAGAAGAAGAATAAAGAAGAAAATTAA 855 0.3661 MPKKIRKSLQNYLSKIKIPRSKVHIPSKHRTLSVRKHRRTSSFVNDDINPKASSFSIDDKKNNNKDVEATLTDIDHFLLENFKSLYIKDGEEKVHHEEEEEESHENGKFPKVGPFLFMGPKRDRYGSNRHNMKRDFSGSLEDTTIGDQTGSSTTSTTTTNDSSSSNTYYAKDQEMEQTQPNKCVVILGCSPNPYKDFHRSMQNMVEARLKNNENVDWEFMEQLLFFHMNMNEKKSYKFILCAFVDLVTVMRPPSETTTSMVNPRSVRTVRSGKELRKKKNKEEN 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1190 284 MobiDBLite consensus disorder prediction 141 166 - -
Lal20g1190 284 MobiDBLite consensus disorder prediction 123 137 - -
Lal20g1190 284 MobiDBLite consensus disorder prediction 93 166 - -
Lal20g1190 284 ProSiteProfiles OVATE domain profile. 186 249 IPR006458 -
Lal20g1190 284 Pfam Transcriptional repressor, ovate 190 248 IPR006458 -
Lal20g1190 284 PANTHER TRANSCRIPTION REPRESSOR OFP14 3 257 - -
Lal20g1190 284 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 3 257 IPR038933 GO:0045892
Lal20g1190 284 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 189 248 IPR006458 -
Lal20g1190 284 MobiDBLite consensus disorder prediction 93 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1190 Lal-Chr20 16372184 16374084 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Lal20g1190 Ovate 3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1190 - - mtr:MTR_4g012060 211.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1190 20 16372184 16374084 Lal20g1190 20 16372184 16374084 ECH
Lal20g1190 20 16372184 16374084 Lal18g0187 18 1535802 1538449 LSH
Lal10g1137 10 18096613 18097575 Lal20g1190 20 16372184 16374084 PCT
Lal8g0238 8 1604840 1605821 Lal20g1190 20 16372184 16374084 PCT
Lal20g1190 20 16372184 16374084 Lal10g1137 10 18096613 18097575 PCT
Lal20g1190 20 16372184 16374084 Lal8g0238 8 1604840 1605821 PCT