Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1160 ATGGAGGTGCTCAAAGGAATTGCTAAGCAAGGACTTGCATCTCATGAAGGAGTTGCCATCAGAGCTGACCAGAAGAGTTACAGCTACCAGCAACTCATCTCATCTGCGCAGAAGATATCTAATCTCTTGTGTGGTGATGTGAAAACAGGAAATCTTGGTGGAGCTCGAGTAGGAATTGTCGCCAAGCCCTCTGCTGAATTTGTTGCTGCAGTACTTGGTACTTGGTTTAGTGGAGGTGTTGCTGTTCCACTTGCACTCAGCTATCCAGAAGTAGAGCTCTTGCATGTGGTTAATAACTCGGATGTGTCTACAATACTGAGTACTGAAGATCACAGTGAATTATTGCAAAGTGTTGCCAATAAAACTTCTTCTCAGTTTTTTCTTATTGCACCTGTTCCCAACAAGTCTTCAGAGCAAATCAGAGATGAAAATTCACAGACTGGGGAAATTGATCCGGACAGAATTTCCTTGGAGAGTATAGGAAGAACAAGTGAAGATCCAGCACTGATTTTGTACACTAGCGGAACAACAGGTAAACCTAAGGGAGTTGTTCATACACACAGAAGCATCGCTGCACAGGTTGAATTTTTGCCAAAATTTAGTGTGAGGGGAATTTGGCAGAGATGGCGTGAGTCGTATCCAACTGAAGGATCTAAGTCTGATGATGCTATAACTTTGTTCACCGGAGTTCCGACTATATACACCCGATTAATACAAGGTTATCATGCAATGGATCCTGAGCTACAAGCCACTTCAGCTTCTGCTGCAAGGAACTTGCGTCTTATGATGTGTGGGTCCTCTGCACTTCCTCAACCTGTTATGCAAGAATGGGAAGTTATTACCGGGCATCGCTTATTGGAGCGATATGGCATGACTGAATTTGTCATGGCATTGTCAAATCCATTGAAAGGTCAGCGTAAGGCAGGCACTGTTGGCAAACCGTTTCCTGGTATACAGGTCAAGATTCTTGCAGATGAGGACAACAGTAGTGAAACAAAAGGAGTTGGCGAGCTTTGTGTTAAAAGCCCTTCGCTGTTTAATGAATATTGGAAACTTCCTGAGGTAACAAAGGAATCATTCACTGATGATGGATTCTTTAGGACTGGCGATGCAGCTACTACAGATGACGATGGATATTACATCATTCTAGGACGTACTAATGCTGATATAATCAAGGTCGGTGGCTATAAACTGTCTGCATTAGAAATTGAATCACATCCAGCTGTATCAGAATGTTGTGTTTTGGGTATACCAGACAAAGATTATGGAGAAATTGTAGGCGCCATTATTGTGGCTGATGCCGATCTCAAACGAAAGCACGATGAGGAATCAAAGCCTCCTCTAACCCTAGAAGAATTATCCACCTGGGCCAAAGACAAAATTGCACCATACAAGATACCGACTCGACTAATCGTGTGGGACTCAATCCCTCGCAACGCGATGGGGAAGGTGAATAAAAAAGAGCTGAAGAAATTGCTGGTTTCAGAAGAGTAA 1494 0.4324 MEVLKGIAKQGLASHEGVAIRADQKSYSYQQLISSAQKISNLLCGDVKTGNLGGARVGIVAKPSAEFVAAVLGTWFSGGVAVPLALSYPEVELLHVVNNSDVSTILSTEDHSELLQSVANKTSSQFFLIAPVPNKSSEQIRDENSQTGEIDPDRISLESIGRTSEDPALILYTSGTTGKPKGVVHTHRSIAAQVEFLPKFSVRGIWQRWRESYPTEGSKSDDAITLFTGVPTIYTRLIQGYHAMDPELQATSASAARNLRLMMCGSSALPQPVMQEWEVITGHRLLERYGMTEFVMALSNPLKGQRKAGTVGKPFPGIQVKILADEDNSSETKGVGELCVKSPSLFNEYWKLPEVTKESFTDDGFFRTGDAATTDDDGYYIILGRTNADIIKVGGYKLSALEIESHPAVSECCVLGIPDKDYGEIVGAIIVADADLKRKHDEESKPPLTLEELSTWAKDKIAPYKIPTRLIVWDSIPRNAMGKVNKKELKKLLVSEE 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1160 497 Gene3D - 196 385 IPR042099 -
Lal20g1160 497 Gene3D - 1 195 IPR042099 -
Lal20g1160 497 Pfam AMP-binding enzyme C-terminal domain 404 483 IPR025110 -
Lal20g1160 497 CDD MCS 18 491 - -
Lal20g1160 497 PANTHER ACYL-COA SYNTHETASE 192 494 - -
Lal20g1160 497 PANTHER ACYL-COA SYNTHETASE 1 197 - -
Lal20g1160 497 PRINTS AMP-binding signature 165 176 IPR020459 -
Lal20g1160 497 PRINTS AMP-binding signature 177 185 IPR020459 -
Lal20g1160 497 Pfam AMP-binding enzyme 223 393 IPR000873 -
Lal20g1160 497 Pfam AMP-binding enzyme 18 197 IPR000873 -
Lal20g1160 497 ProSitePatterns Putative AMP-binding domain signature. 170 181 IPR020845 -
Lal20g1160 497 Gene3D - 388 496 IPR045851 -
Lal20g1160 497 SUPERFAMILY Acetyl-CoA synthetase-like 13 495 - -
Lal20g1160 497 PANTHER MALONATE--COA LIGASE-LIKE 1 197 - -
Lal20g1160 497 PANTHER MALONATE--COA LIGASE-LIKE 192 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1160 Lal-Chr20 16072080 16077339 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1160 165 493 Monolignol Biosynthesis Gene Families AT4G19010 26.344 8.65e-30 120
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1160 20 16072080 16077339 Lal20g1160 20 16072080 16077339 ECH