Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1159 ATGATGGCTGGAAACCCTAATTGGTGGAATATGAATCCACCATCTCTGATTCCTCCACAATATGTTCCTTCAGGATCTTCTTCAATTCCTTTAAATTCTTTGACAGAAAATCCAGAACCTCCTCAGCCATGGAACCAACTTCATTTCAATAATGGATTACCTGAAGAATCAAAAAAGTTAGAAAACTGGGATGATCATATTCTTAACTCATCCACTAATGTTGATTTAATAAAACAAGAGGGTTCTCAAAGTGTCAACTTCTATAACCATAGTAATTATGAAGAATTTCTTCAGGATTCTGGAGCTGGGTCATCTTGGTCACATATGGTGCAAGTTTCAAATAATTCTCCTAGGTCAAATGTCACTACTAATTTGAGTACTAATAATTTATTGGATCTCACTTATAACAAGGTTCATCATCATCATAGAAATAACCAGCTGGCAGATCACACATCTGAGTGTATTAGCACAGCTACTGCTATATCTTGTAAGAAGGTTAAGGGTCAACCATCTTCAAGCCAACCCCCTCTAAAGGTGAGAAAGGAGAAACTAGGTGATAGAGTAACAGCACTTCACCAGATAGTTTCCCCATTTGGAAAGACTGATACAGCTTCTGTGTTGTTAGAAGCCATTGGATATATCAGATTCCTGCAGAGTCAAATTGAGGCACTAAGTTCTCCATATTTGGGCAATGTATCAATAAACATAAAGAATCAATCGGTCATGAGTGACATTGGCTTGAAAAGAAAGGGAGTTCCAAACCAGGATGAAAAAGAAAAGGGAACAGATTTGAAGAGTAGAGGGTTGTGTTTGGTTCCTGTTTCTTGCACCCAACATGTTGGATGTGAAAATGAAGCTGATTTTTGGGCACCTTCATATGACACTGGATTTTAA 894 0.377 MMAGNPNWWNMNPPSLIPPQYVPSGSSSIPLNSLTENPEPPQPWNQLHFNNGLPEESKKLENWDDHILNSSTNVDLIKQEGSQSVNFYNHSNYEEFLQDSGAGSSWSHMVQVSNNSPRSNVTTNLSTNNLLDLTYNKVHHHHRNNQLADHTSECISTATAISCKKVKGQPSSSQPPLKVRKEKLGDRVTALHQIVSPFGKTDTASVLLEAIGYIRFLQSQIEALSSPYLGNVSINIKNQSVMSDIGLKRKGVPNQDEKEKGTDLKSRGLCLVPVSCTQHVGCENEADFWAPSYDTGF 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1159 297 Gene3D - 178 231 IPR036638 GO:0046983
Lal20g1159 297 PANTHER BHLH TRANSCRIPTION FACTOR-LIKE PROTEIN 9 284 - -
Lal20g1159 297 CDD bHLH_AtbHLH_like 178 225 IPR045239 -
Lal20g1159 297 MobiDBLite consensus disorder prediction 28 52 - -
Lal20g1159 297 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 9 284 - -
Lal20g1159 297 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 178 228 IPR036638 GO:0046983
Lal20g1159 297 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 217 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1159 Lal-Chr20 16062197 16067452 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1159 162 279 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 54.237 1.81e-32 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1159 - - gmx:100802121 370.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1159 20 16062197 16067452 Lal20g1159 20 16062197 16067452 ECH
Lal20g1159 20 16062197 16067452 Lal18g0174 18 1428101 1433754 LSH