Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1154 ATGGAATACTTCGTCGGTGGCTATATCGGCGCCGGAGCTAACCAATTTTCGCCGGAGAACCGATACAGTGAACCAAAACATGGCGTGCCTTTCGCCGTTGATGACCTCCTCGACTTCTCTAACGCTGATGCCATTATGTCGGACGGTTTCTTCGACAATGTCGTAGGTAACTCGATTGATTCCTCCACCGTCGCCGGAACCGTTGACAGCGGCAATTCCACAATTTCCGGCACCATTGTCCCTTGCGCTTTTTCTGGTGGCGATTCTCAATTCTCCGGTGGAGAACTCTATGTTCCGTACGATGATATGGTTGAACTTGAATGGCTCTCAAACTTCGTGGAAGACTCATTCTCGACCGAGGAAGATTTAAAAACACTCCAACTTCTCTCCGGCGGCGCCACCGTTTCCTCCGCCACCACCAAACCACACACACCAGACTCATCCTCCTCCTCCGATATCGACACAACACGAAACACACAGTTTCTCCACGTGGAAACCCCTTTCCCAGGGAAAGCAAGAAGCAAACGCTCACGCGCTGCACCAGGCGATTGGTCTAAACGCCTCGTTCACATAGTGACATCACCCAAAACAAAGAAAGAAGAGTCATTAAACTTAAACACAAACAACAATAATGATAGTAATAGTGTGGAATGTTATGGAAGAAAGTGTCTCCATTGTGGTGTAGAAAAAACACCACAATGGAGAACTGGGCCTATGGGCCCAAAGACATTATGTAACGCGTGTGGCGTAAGGTTCAAGTCTGGTAGGTTAGTACCGGAATATCGACCAGCGGCGAGTCCTACGTTTGTATCAACGAAACATTCGAATTCTCATAGGAAGGTTATGGAGTTGAGAAGACAGAATGAGGTTCAACGACATCACCATCATCATCAAGAGTTGATTAGTCAAAATTCTATTTTTGATGTATCCAATGGTGGAGATGAGTACTTGATCCAATGTAATCATATTGGACAAGAGTTTAGACATGTTATGTAG 996 0.4629 MEYFVGGYIGAGANQFSPENRYSEPKHGVPFAVDDLLDFSNADAIMSDGFFDNVVGNSIDSSTVAGTVDSGNSTISGTIVPCAFSGGDSQFSGGELYVPYDDMVELEWLSNFVEDSFSTEEDLKTLQLLSGGATVSSATTKPHTPDSSSSSDIDTTRNTQFLHVETPFPGKARSKRSRAAPGDWSKRLVHIVTSPKTKKEESLNLNTNNNNDSNSVECYGRKCLHCGVEKTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPAASPTFVSTKHSNSHRKVMELRRQNEVQRHHHHHQELISQNSIFDVSNGGDEYLIQCNHIGQEFRHVM 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1154 331 CDD ZnF_GATA 222 269 IPR000679 GO:0006355|GO:0043565
Lal20g1154 331 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 220 281 - -
Lal20g1154 331 MobiDBLite consensus disorder prediction 169 183 - -
Lal20g1154 331 PANTHER GATA TRANSCRIPTION FACTOR 9 2 330 - -
Lal20g1154 331 Gene3D - 219 301 IPR013088 GO:0006355|GO:0008270
Lal20g1154 331 ProSitePatterns GATA-type zinc finger domain. 223 248 IPR000679 GO:0006355|GO:0043565
Lal20g1154 331 PIRSF Txn_fac_GATA_plant 19 312 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lal20g1154 331 SMART GATA_3 217 267 IPR000679 GO:0006355|GO:0043565
Lal20g1154 331 MobiDBLite consensus disorder prediction 168 187 - -
Lal20g1154 331 ProSiteProfiles GATA-type zinc finger domain profile. 217 253 IPR000679 GO:0006355|GO:0043565
Lal20g1154 331 PANTHER GATA TRANSCRIPTION FACTOR 2 330 - -
Lal20g1154 331 Pfam GATA zinc finger 223 256 IPR000679 GO:0006355|GO:0043565
Lal20g1154 331 MobiDBLite consensus disorder prediction 134 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1154 Lal-Chr20 16012680 16014872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1154 31 331 C2C2-Gata Transcription Factor Family AT4G32890 47.152 3.46e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lal20g1154 GATA 2.7e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1154 - - aip:107619293 422.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1154 20 16012680 16014872 Lal20g1154 20 16012680 16014872 ECH
Lal20g1154 20 16012680 16014872 Lal1g1328 1 15017883 15020558 LSH
Lal20g1154 20 16012680 16014872 Lal18g0167 18 1360310 1362620 LSH