Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1153 ATGGCAATGTCCTGCAAGGATGGTACTAAGAATGGAATGGATAATGGAAAGTATGTAAGATATACACCTGAGCAGGTTGAAGCTCTTGAGAGGCTTTATCATGATTGTCCTAAACCTACTTCGATTCGGCGCCAACAACTAATTCGTGATTGTCCTATTCTCTCTAACATTGAGCCTAAACAACTCAAGGTTTGGTTCCAGAATAGAAGATGTAGAGAGAAGCAGAGAAAAGAGGCTTCACGGCTGCAAACTGTAAATAGGAAGTTGACGGCAATGAACAAACTGCTGATGGAGGAGAATGATAGGTTGCAGAAGCAAGTGTCTCATCTGGTTTATGAAAATGGCTATTTTCGTCAACACACCCAAAATACTACGATTGCAACTAAAGACACAAGCTGTGATTCAGCCGTGACAAGTGGTCAACACAGTTTGACGACTAAACATCCGCCGAGGGATGCAAGTCCTGCTGGACTTTTGTCCATTGCAGAAGAAACTTTAGCAGAGTTTCTTTCGAAGGCCACTGGAACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGCGTGGCAGCAAGAGCCTGTGGTCTAGTGGGTCTAGAACCCACAAGGGTTGCAGAAATCCTCAAAGATCGGCCTTCGTGGTTTCGAGATTGCCGAGCTGTTGATGTTCTCAATGTGCTGCCCACATCAAATGGTGGAACCATTGAGCTGCTTTATATGCAGCTATATGCGCCAACCACATTGGCACCTGCTCGAGACTTCTGGTTATTGCGCTACACTTCTGTTTTAGAAGATGGGAGCCTAGTGATATGTGAGAGGTCTCTTAAAAATACTCAAAATGGTCCAAGCATACCTCCCGTGCCGCATTTTGTTAGAGCAGAGATGCTGCCTAGTGGATACCTGATAAGACCTTGTGAAGGTGGTGGTTCTATCATCCACGTTGTTGATCATATGGATTTGGAGCCATGGAGTGTGCCAGAAGTACTGCGTCCACTTTATGAATCATCGGTAATGCTGGCCCAGAAGACAACTATGGCGGCCCTACGTCAGCTAAGGCAGATTTCACATGAAGTTTCTCAGTCAAATGTCACCACTGGGTGGGGTAGACGTCCAGCGGCTCTAAGAGCACTTAGCCAGAGATTGAGCCGGGGTTTCAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGTCAACAATTGGCAATGATGGCGTAGATGATGTTACGATTCTAGTGAATTCATCCCCGGAAAAGTTAATGGGTCTAAATCTTTCTTTTGCAAATGGATTTCCATCTGTCAGTAATTCAGTCTTGTGTGCCAAAGCATCAATGCTATTACAGAACGTGCCCCCAGCCATTCTCCTCCGGTTCCTGCGGGAGCATAGATCAGAATGGGCAGACAACAACATGGATGCATACTCAGCTGCTGCCATTAAAGTTGGCCCTTGTAGCTTTTCAGGATCTCGTGTTGCAAATTATGGGGGTCAAGTTATTCTCCCTCTAGCACATACTGTTGAGCATGAAGAGTTTCTGGAGGTCATTAAATTGGAAGGAATTGCACATTCTCCTGAAGAGGCAATGATGCCCAGAGAAGTGTTTCTTTTGCAACTCTGTAGTGGAATGGATGAGAATGCAGTTGGCACCTCTGCCGAGCTTATATTTGCTCCAATTGATGCGTCCTTTGCTGATGATGCCCCGCTTCTACCTTCTGGATTTCGCATCATTCCTCTTCAATCTGGAAAGGAAGCTTCCAGCCCTAACCGTACCCTTGACCTTGCGTCTGCCCTTGACATTGGCCCCACCAAAAACAAAGCTTCGAATGATTATGCTGGAAATTCCGGCTCTGTGAGATCTGTGATGACAATAGCATTTGAATTTGCATTTGAAAGTCATATGCAAGATCATGTAGCATCAATGGCACGTCAATATGTTCGCAGCATTATATCATCAGTCCAAAGGGTTGCATTAGCACTCTCTCCTCATTTGAGTTCACATGCTGGGCTTAGGACTCCATTGGGTACTCCGGAAGCACAAACACTTGCTCATTGGATATGCAACAGTTACAGGTGCTATATGGGTGTTGACCTACTTAAATCGAATATCGAGGGGAACGAATCTGTGCTGAAATCCCTGTGGCACCACTCAGATGCAATATTGTGTTGCACTCTAAAGGCAACGCCGGTGTTTACCTTTTCTAACCAAGCAGGGCTTGACATGCTGGAGACCACGCTAGTCGCACTCCAAGATATAACTTTAGAGAAAATATTTGACGATCATGGACGAAAGATTCTCTTCGCCGAGTTTCCTCAGATTATCCAACAGGGTTTTGCATGTTTACAAGGTGGTCTTTGCCTCTCGAGCATGGGTCGACCCGTTTCGTATGAGAGAGTTGTTGCTTGGAAGGTGCTGAATGAAGAAGAAAATGCTCATTGTATTTGCTTTATGTTTATGAACTGGTCTTTTGTTTGA 2517 0.4537 MAMSCKDGTKNGMDNGKYVRYTPEQVEALERLYHDCPKPTSIRRQQLIRDCPILSNIEPKQLKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSHLVYENGYFRQHTQNTTIATKDTSCDSAVTSGQHSLTTKHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDRPSWFRDCRAVDVLNVLPTSNGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPSIPPVPHFVRAEMLPSGYLIRPCEGGGSIIHVVDHMDLEPWSVPEVLRPLYESSVMLAQKTTMAALRQLRQISHEVSQSNVTTGWGRRPAALRALSQRLSRGFNEALNGFTDEGWSTIGNDGVDDVTILVNSSPEKLMGLNLSFANGFPSVSNSVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYSAAAIKVGPCSFSGSRVANYGGQVILPLAHTVEHEEFLEVIKLEGIAHSPEEAMMPREVFLLQLCSGMDENAVGTSAELIFAPIDASFADDAPLLPSGFRIIPLQSGKEASSPNRTLDLASALDIGPTKNKASNDYAGNSGSVRSVMTIAFEFAFESHMQDHVASMARQYVRSIISSVQRVALALSPHLSSHAGLRTPLGTPEAQTLAHWICNSYRCYMGVDLLKSNIEGNESVLKSLWHHSDAILCCTLKATPVFTFSNQAGLDMLETTLVALQDITLEKIFDDHGRKILFAEFPQIIQQGFACLQGGLCLSSMGRPVSYERVVAWKVLNEEENAHCICFMFMNWSFV 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1153 838 SMART START_1 160 370 IPR002913 GO:0008289
Lal20g1153 838 Gene3D - 195 377 IPR023393 -
Lal20g1153 838 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 838 IPR044830 GO:0003700
Lal20g1153 838 Gene3D - 9 83 - -
Lal20g1153 838 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677
Lal20g1153 838 ProSiteProfiles START domain profile. 151 366 IPR002913 GO:0008289
Lal20g1153 838 SUPERFAMILY Homeodomain-like 16 79 IPR009057 -
Lal20g1153 838 SUPERFAMILY Bet v1-like 160 368 - -
Lal20g1153 838 CDD bZIP 69 108 - -
Lal20g1153 838 Pfam START domain 161 369 IPR002913 GO:0008289
Lal20g1153 838 CDD START_ArGLABRA2_like 155 370 - -
Lal20g1153 838 CDD homeodomain 17 77 IPR001356 GO:0003677
Lal20g1153 838 Pfam Homeodomain 17 75 IPR001356 GO:0003677
Lal20g1153 838 Coils Coil 86 106 - -
Lal20g1153 838 SMART HOX_1 14 80 IPR001356 GO:0003677
Lal20g1153 838 Pfam MEKHLA domain 695 837 IPR013978 -
Lal20g1153 838 PANTHER CLASS III HD-ZIP PROTEIN CNA1 1 838 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1153 Lal-Chr20 15974163 15981990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1153 1 790 Homeobox Transcription Factor Family AT1G52150 83.586 0.0 1382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal20g1153 START 1.3e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1153 K09338 - gmx:100800165 1565.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1153 20 15974163 15981990 Lal20g1153 20 15974163 15981990 ECH
Lal25g0304 25 2077296 2084736 Lal20g1153 20 15974163 15981990 PCT
Lal20g1153 20 15974163 15981990 Lal25g0304 25 2077296 2084736 PCT