Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1151 ATGCCGGTGCTTCGTAGTGGAGTCCGAAGGGGTCGGGCAAGAGGGAAGAATCAGAATCAGAATCAGAATCGGAATCAGAATCCTCCGGTGGTTGAAGTGGAAGCAATTGCAACTAGAACACGGAGACGCCGTGCTGCAGCGGCGGCAGAAGTGGTGGTGCCGGAAAACAATAATAATAATAAGAAACGACAGCAACGGAAGAAGGTGGTGGTCAATGAGAAGGTAGTTGTACCGGAGAAGGAAAAGGAGGAGGAGGAAGGGGGTCATGTTGGTGGCGACGGAGGAGGAGGAGGAGGAGAGGTTGGTGGTGGTGGTAGGGCGGAGAAGGAGGGGGAGGAAGAGGTAAAGGAGAAAAAGATGAATGGTCTTGATAGCGGAGGTCGCAGCAACAATAAGGCAAATGCCGGTGAAGATGAAGGGAATCCTACTCCTCTTCCTGAGAAGGTTCAAGTAGGTGGTTCCCCTTGGTATAAATTAGAAAGAAAACTTGGCAAGGGTGGATTTGGGCAAGTATATGTTGGACGACGTTTTACTGGTTCAAATTTGAGTGAGAGAACTGGATCTGGAGCTGTAGAGGTTGCATTAAAACTTGAGCACAAAACTAGTAAAGGATGCAACCATGGACCACCTTATGAGTGGCAAGTGTACAATACTCTTGGTGGCAGTCATGGTGTGCCACAAGTACATTACAAGGGCAGGCAAGGTGACTATTATATCATGGTTATGGATATTCTTGGACCTAGTTTGTGGGATGTTTGGAGTAATAACAATCACATCATGTCCACTGAAATGGTTGCTTGTATTGCTATTGAAGCAATATCCATCTTGGAGAAGATGCATTCTAGAGGGTATGTGCATGGGGATGTGAAGCCTGAAAATTTTCTACTTGGTCCTCCTGGGACACCTGATGAGAAAAAATTGTTCCTTGTAGATCTTGGATTAGCTACTAAATGGCGGGATAGTACGACAGGTTTGCATGTAGATTATGACCAAAGGCCAGATGTCTTTAGGGGCACTGTCCGTTATGCTAGTGTGCATGCACATTTAGGAAGAACCGGAAGCAGGAGGGATGATTTGGAATCTCTTGCTTATACACTGATTTTTCTTCTTCGAGGCCGTCTTCCTTGGCAGGGATACCAGGGAGACAACAAGGGATTTCTTGTTTGCAAGAAGAAGATGGGGACATCTCCAGAGATGCTATGTTCCTTTTGTCCCCATCCTTTTAGTCAGTTTGTGGAACATGTGGTCAACTTAAAGTTTGATGAAGAGCCTAACTATGCAAAATACATTTCTCTATTTGATGGGATTGTTGGTCCCAATCCAGATATTAGGCCACTTAATACAGAAGGTGCACAAAAGCTTATTGGTCATAAGAGAGGCCGGTTGACAATGGAAGAAGATGATGATGAACAAGCAAAAAAGAAGATTCGTTTGGGTTTGCCAGCAACCCAGTGGATAAGTGTTTACAATGCGCGTAGACCGATGAAACAAAGATATCACTACAATGTGTCAGATCAAAGGCTATCCCAGCACATTGAGAAAGGAAATGAGGATGGCTTATTTATTAGCAGTGTTGCTGCAGCTCAGGACCTTTGGGCCATTATCATGGATGCCGGGACAGGTTTCAGTTCCCAAGTTTATGAAGTTTCCCACGAATTTCTCCATAAGGAATGGATCATGGAGCAGTGGGAAAAAAATTACTACATCAGTTCTGTTGCTGGAACTTCACATGGGAGCTCCCTAGTAGTGATGTCTAAGGGCACTCAGTATTTGCAGCAATCATACAAAGTCAGTGAATCATTTCCTTTCAAGTGGATTAACAAAAAATGGAAGGAGGGCTTTTATGTGACTGCAATGGCGACCTCAGCGTCTAGATGGGGAATAGTTATGTCTCGTGGTGCTGGATTTTCTGATCAGGTTATTGAGCTAGATTTTCTGTATCCGAGTGAAGGAATTCACAAGCGGTGGGATTGTGGATATCGAATCACTGCCACTGCTGCAACTTTGGATCAAGCTGCTTTTGTCCTGAGTGTGCCAAGGAGGAGGCCCACGGATGAAACTCAAGAAACTCTGAGGACTTCTGCTTTTCCTAGTACGCATGTCAAGGAAAAATGGGCAAAGAATCTCTACATGGCTTCTGTTTGCTACGGACGAACGGTTTCGTGA 2166 0.4506 MPVLRSGVRRGRARGKNQNQNQNRNQNPPVVEVEAIATRTRRRRAAAAAEVVVPENNNNNKKRQQRKKVVVNEKVVVPEKEKEEEEGGHVGGDGGGGGGEVGGGGRAEKEGEEEVKEKKMNGLDSGGRSNNKANAGEDEGNPTPLPEKVQVGGSPWYKLERKLGKGGFGQVYVGRRFTGSNLSERTGSGAVEVALKLEHKTSKGCNHGPPYEWQVYNTLGGSHGVPQVHYKGRQGDYYIMVMDILGPSLWDVWSNNNHIMSTEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGPPGTPDEKKLFLVDLGLATKWRDSTTGLHVDYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGYQGDNKGFLVCKKKMGTSPEMLCSFCPHPFSQFVEHVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPLNTEGAQKLIGHKRGRLTMEEDDDEQAKKKIRLGLPATQWISVYNARRPMKQRYHYNVSDQRLSQHIEKGNEDGLFISSVAAAQDLWAIIMDAGTGFSSQVYEVSHEFLHKEWIMEQWEKNYYISSVAGTSHGSSLVVMSKGTQYLQQSYKVSESFPFKWINKKWKEGFYVTAMATSASRWGIVMSRGAGFSDQVIELDFLYPSEGIHKRWDCGYRITATAATLDQAAFVLSVPRRRPTDETQETLRTSAFPSTHVKEKWAKNLYMASVCYGRTVS 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1151 721 Pfam Protein kinase domain 157 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g1151 721 ProSitePatterns Serine/Threonine protein kinases active-site signature. 284 296 IPR008271 GO:0004672|GO:0006468
Lal20g1151 721 Gene3D Transferase(Phosphotransferase) domain 1 123 477 - -
Lal20g1151 721 ProSitePatterns Protein kinases ATP-binding region signature. 163 196 IPR017441 GO:0005524
Lal20g1151 721 MobiDBLite consensus disorder prediction 1 152 - -
Lal20g1151 721 PANTHER CASEIN KINASE-RELATED 103 694 - -
Lal20g1151 721 CDD STKc_CK1 157 433 - -
Lal20g1151 721 SUPERFAMILY Protein kinase-like (PK-like) 157 437 IPR011009 -
Lal20g1151 721 ProSiteProfiles Protein kinase domain profile. 157 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g1151 721 MobiDBLite consensus disorder prediction 105 123 - -
Lal20g1151 721 MobiDBLite consensus disorder prediction 69 90 - -
Lal20g1151 721 MobiDBLite consensus disorder prediction 13 29 - -
Lal20g1151 721 PANTHER - 103 694 - -
Lal20g1151 721 SMART serkin_6 157 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1151 Lal-Chr20 15956411 15963161 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1151 156 316 EF-hand Containing Proteins AT1G50700 29.240 6.48e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Lal20g1151 Pkinase 2.7e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1151 - - gmx:100799630 1123.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1329 1 15058055 15064344 Lal20g1151 20 15956411 15963161 ECH
Lal20g1151 20 15956411 15963161 Lal20g1151 20 15956411 15963161 ECH
Lal20g1151 20 15956411 15963161 Lal1g1329 1 15058055 15064344 LSH