Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1150 ATGGATCAGCTCAGTTTAGTCAAATCTCCATTCGAGCAATTCTCCATAGATGAAATCTTGGAATTGGAAAGAATGTTCCAGGAGATGGGAGGAAAACCACCTGATCGTAACTTCTGTGAGGAGATTGCCATAAAATTCAGTTCCACGTCACACCATGTTGGGAAGACTACCTTATCATGGGAACAGGTGCAGCAGTGGTTCCAAAATAGACAAGAAGAGTTGGCGGCTGATGTTACTTTGTCACCCGATCCGCTGAAAGTAATTGTTGATCAATCAGATGCAACTTTTTTTAGAAATGGACACAAAAACTCTTCAACTCCAAAAGATAAACCAGCTACAGATTTGAATGGGTTGAAATTTGAAGCAAGATCTTTCAAAGACTTTGCATGGCACGATGTTGCATCATTCCTTAACTTTAGAGTCATGAGCACAGGGGAACTTGAAGTTCGTGTGCGATATGCTGGATTTGGTAAGGACGAGGACGAGTGGGTCAATGTTAAAGAGGGAGTGCGCCAATCATCCATCCCATTGGAACCTTCTGAGTGTCACATGGTGAAGGATGGAGATCTTGTACTGTGTTTCAAGGAAAGCGACGATTATGCGCTCTATTGTGATGCTCATGTTTTAAAAATCTCGAGGGAGGAACACGATGAAATCGAGTGTAAATGCATCTTCACTGTCCGATACGAGTATGACAACTCCGAGGCAGATGTTTATGGGAAGGACATATGCTGTAGACCTTCACAAGAGAAATCTGTGGCCTTGGCCTTGCCAATGCAGAGCATAGAGAGCTTGTGGGGTTGA 804 0.4341 MDQLSLVKSPFEQFSIDEILELERMFQEMGGKPPDRNFCEEIAIKFSSTSHHVGKTTLSWEQVQQWFQNRQEELAADVTLSPDPLKVIVDQSDATFFRNGHKNSSTPKDKPATDLNGLKFEARSFKDFAWHDVASFLNFRVMSTGELEVRVRYAGFGKDEDEWVNVKEGVRQSSIPLEPSECHMVKDGDLVLCFKESDDYALYCDAHVLKISREEHDEIECKCIFTVRYEYDNSEADVYGKDICCRPSQEKSVALALPMQSIESLWG 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1150 267 Pfam SAWADEE domain 118 244 IPR032001 GO:0003682
Lal20g1150 267 Pfam Homeodomain 14 70 IPR001356 GO:0003677
Lal20g1150 267 Gene3D - 116 176 - -
Lal20g1150 267 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 1 1 250 - -
Lal20g1150 267 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 250 IPR039276 -
Lal20g1150 267 Gene3D - 177 249 - -
Lal20g1150 267 ProSiteProfiles 'Homeobox' domain profile. 5 77 IPR001356 GO:0003677
Lal20g1150 267 Gene3D - 12 77 - -
Lal20g1150 267 SUPERFAMILY Homeodomain-like 14 71 IPR009057 -
Lal20g1150 267 CDD homeodomain 14 70 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1150 Lal-Chr20 15949123 15953920 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lal20g1150 SAWADEE 9.1e-36 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1150 - - gmx:100799110 305.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1150 20 15949123 15953920 Lal20g1150 20 15949123 15953920 ECH