Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1145 ATGATTCAAGTAAGAAAACCCCATTTGAAGTTGCTTCACTTTCTTCTCTTTCTGCTAGAACTTAACTGCATCAATTCTTATTACCCTATGACACCAATGAACTGCACTGACACAAGCCGAGTTTGCACTTCTTTCTTGGCCTTTAAGCCTAAAAAAAACCAAACAATTTCTCTGATACAAAGCATGTTTGATGTGTTACCAATAGACATCACTGTTGAAGGCAATGATTGGGACTATATATTCATAAGGAAGAACTGTTCTTGTGCTAATGGTATTAAAAAATATGTGTCTAGCACTACTTTCACTGTTAAATCCAATGAAGGGTTAGTGTATGATTTGGTTATGGATGCATATGATGGACTTGGTTTCCTTCCTAACACAACTAGGATGGCAAGGAATGGTGCTGTTGTGTCACTAAGGTTGTTTTGTGGCTGCTCCAGTGGACTTTGGAACTATTTGATGAGTTATGTTATGAGAGATGGGGACAGTGTTGAATCGTTGGCGAGCCGATTCGGGGTTAGTATGGATAGCATTGAGTCTGTAAATGGCATTGATGATCCTGATAATGTCACTGTTGGTTCACTTTATTATATACCACTTGATTCAGTTCCGGGGGATCCATATCCGGTGAAGAATGATACTCCTCCAGCTCCGGTTCCTGCCCCATCTTTTGATAATTTTTCAGATGATCAAGTCAATCATAAGGCTCATTTACCTTACGGATGGATCGTTGGGGGTTTAGGGGTTGGTCTTGCTCTGATAATATTAAGCATATTTCTCTGTGTTTGCCTGAGATCTGAAGCCAGAAGTCATGAAAAAGATGCCCAGGGAACGATTCGTAAATTCCATGTTCTTCGGAATCCAAGTTTTTTCTGTGGTTCTGGAAGGTACATATGTGGCAAATCTATGGGTCAGAATCAAACTGATGGTGAATCCAGCCATCACCAAGTGACGATTCCTAAAGTTTCAAGTTTAGGTTCTGACGTATTCGACATGGATAAGCCTATAGTTTTTGCATACGAAGACATTTTTTCCTCAACTGATGGTTTCTCTGATTCAAATCTACTTGGGCATGGAACATATGGTTCTGTTTACTATAGCCTCCTTCGTGACCAGGAAGTTGCTATTAAAAGAATGACAGCTACGAAAACGAAAGAATTTATGTCGGAGATGAGAGTTCTCTGCAAGGTTCATCATGCTAATCTGGTAGAATTGATCGGCTATGCGGCTAGTCATGATGAGCTTTTCCTTATTTATGAATATGCTCAAAAGGGTTCACTTAGAAGCCATTTGCATGATCCTCAAAATAAGGGCCATTCTCCACTTTCTTGGATCATGAGGGTCCAGATTGTGCTTGATGCTGCTAGGGGCCTTGAATACATACACGAGCACACAAAAACTCATTATGTCCACCGAGATATAAAGACCAGCAACATTTTGCTCAATGCTTCCTTTAGAGCTAAGATTTCAGATTTTGGGTTAGCAAAACTTGTTGGGATAACAAATGAGGCAGAAGTTTCAACTACCAAAGTTGTTGGTACATATGGATATCTTGCTCCCGAATACATGAGTAATGGCCTTGCGACAACGAAAAGTGATGTCTATGCATTTGGTGTTGTGCTTTTTGAGATTATTACGGGGAAGGAGGCCATTATTCGAACAGAAGGCACAGCGACAAAAAATCCGGAACGACGTTCACTGGCATCCATAATGTTGGCAGTTCTCAAGAACTCACCTGATTCCATGAGTATGTCAAGCATGAAGGATTATATTGATCCTAATATGATGAATTTGTATCCTCATGATTGTGTATTTAAGATGGCCACGCTGGCGAAGCAATGTGTGGATGACAATCCCATTTTACGAGCCGATATGAAGCAAGTCGTGATTTCGCTGTCACAGATTCTCCTGTCTTCTGTTGAGTGGGAAGCAACTCTATCTGGGAATAGTCAAGTATTCAGTGGACTTGTTCAGGGAAGATAG 1983 0.406 MIQVRKPHLKLLHFLLFLLELNCINSYYPMTPMNCTDTSRVCTSFLAFKPKKNQTISLIQSMFDVLPIDITVEGNDWDYIFIRKNCSCANGIKKYVSSTTFTVKSNEGLVYDLVMDAYDGLGFLPNTTRMARNGAVVSLRLFCGCSSGLWNYLMSYVMRDGDSVESLASRFGVSMDSIESVNGIDDPDNVTVGSLYYIPLDSVPGDPYPVKNDTPPAPVPAPSFDNFSDDQVNHKAHLPYGWIVGGLGVGLALIILSIFLCVCLRSEARSHEKDAQGTIRKFHVLRNPSFFCGSGRYICGKSMGQNQTDGESSHHQVTIPKVSSLGSDVFDMDKPIVFAYEDIFSSTDGFSDSNLLGHGTYGSVYYSLLRDQEVAIKRMTATKTKEFMSEMRVLCKVHHANLVELIGYAASHDELFLIYEYAQKGSLRSHLHDPQNKGHSPLSWIMRVQIVLDAARGLEYIHEHTKTHYVHRDIKTSNILLNASFRAKISDFGLAKLVGITNEAEVSTTKVVGTYGYLAPEYMSNGLATTKSDVYAFGVVLFEIITGKEAIIRTEGTATKNPERRSLASIMLAVLKNSPDSMSMSSMKDYIDPNMMNLYPHDCVFKMATLAKQCVDDNPILRADMKQVVISLSQILLSSVEWEATLSGNSQVFSGLVQGR 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1145 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Lal20g1145 660 SMART LysM_2 155 199 IPR018392 -
Lal20g1145 660 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 33 660 IPR044812 GO:0019199|GO:0045087
Lal20g1145 660 SUPERFAMILY LysM domain 154 199 IPR036779 -
Lal20g1145 660 ProSiteProfiles LysM domain profile. 154 198 IPR018392 -
Lal20g1145 660 Gene3D Transferase(Phosphotransferase) domain 1 423 648 - -
Lal20g1145 660 Pfam Protein tyrosine and serine/threonine kinase 354 630 IPR001245 GO:0004672|GO:0006468
Lal20g1145 660 SMART serkin_6 350 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g1145 660 SUPERFAMILY Protein kinase-like (PK-like) 327 632 IPR011009 -
Lal20g1145 660 CDD LysM 155 198 IPR018392 -
Lal20g1145 660 PANTHER BNAA06G02020D PROTEIN 33 660 - -
Lal20g1145 660 Gene3D LysM domain 151 204 IPR036779 -
Lal20g1145 660 ProSiteProfiles Protein kinase domain profile. 350 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g1145 660 Gene3D Phosphorylase Kinase; domain 1 324 421 - -
Lal20g1145 660 ProSitePatterns Protein kinases ATP-binding region signature. 356 377 IPR017441 GO:0005524
Lal20g1145 660 Pfam LysM domain 156 193 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1145 Lal-Chr20 15875544 15883149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1145 32 660 Receptor kinase-like Gene Family AT1G51940 69.279 0.0 862
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Lal20g1145 PK_Tyr_Ser-Thr 1.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1145 - - gmx:100796989 1087.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1145 20 15875544 15883149 Lal20g1145 20 15875544 15883149 ECH
Lal20g1145 20 15875544 15883149 Lal1g1331 1 15080003 15087740 LSH
Lal10g1115 10 17971232 17977089 Lal20g1145 20 15875544 15883149 PCT
Lal20g1145 20 15875544 15883149 Lal10g1115 10 17971232 17977089 PCT