LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal20g1133	ATGGATTCCAGGGCAGAAATTGTTCCAGTTGAGAAACATGCACAAGTTTCCGAAGATAATTTGAAACTACACGTAGAAGGTAGTTCAACACAACTTAATGAGGAAAAAATTGAGAATAGCAAGGATAGTGATGAGAATAGGAAGGATAGTGAGTATCTACAAGTGCATGCGCATGTGGAAGTTGCTCCACCACAAGATAATCCACCGCATGATCAAATTACAGAAATTGATGATAATAAGGATTTAGTGGAAGTTGCTCCACCACAAGATAATCCACCGCATGATGAAATTAAAGAAATTGATGATAATAAGGATTTAGTAGAAGTTGCTCCACCACAAGATAATCCACCGCATGATGAAATTACAGAAATTGATGATAATCCACCACAAGTACATGGAGAAGGTGTTCCCCTACCCGAGAATGAGGAAAATGAGGATAACAAGGATATATGGAATGGTTATATTTGTGGAGATAAGAAGTCACTAACAATACTATTGGGCATCATTCTCGGGTATATGCTACTTGGAATTGTAGCATATTTTCTTAATGATCGTTCAAAGGTCTCTCCCCTATCGAAGTTGGTCAATGGCGTTTATTTTGTTATAGTTACCCTCACTAGTGTGGGATATGGAGATATTGTTCCACACACAACGCTTACCAAAATCATGACTAGTCTTTACATTTTAATTGGTTTTTGGATGTGGAATATATTAGTGAATCATTTAATGGACTATGAATTAGAAAAACTAAGAACACGTTTGGTGAGATGGTGTGATAATTCTCCTTATAAAGATTTCAACAACCAAAAAGTGAGGATATATATAACTATTGGAGTTATATTTTCCTTCATTATTGTTGGAGCATTCGGAGCATACTTTTTAGAGACTATGAGTGTGGTTGATAGTTTTTACTTGTCAATTGTATCGATTTCCACAGTGGGTTATGGAGACTATAGCTTTGAAACGAAAGCTGGAAGAGTCTTTGGGTGTATATGGATTTTGATCGGCACACTTATAGTAAACAAAGCTTTCGAATACCTCACTGGTTGTTTATATAACAAGATGATTAATGGGAATGCTCACAAACTATCAAGTGACTATAGTTTTATCATAGATGAACTTGTTGAAATGAATGTGATAGAGGAATGGACCAAGATGAATATAATACAAACATTGGAAAATAGGAAGGAAGCACGTTTGACTGAAGCACGTTTGAGGGAACAAACTGAAGCACGTTTGAGGGAACAAACTGAAGCAAGTTTGATGGAAGCAGATAGCTCCAATACCCCACTAATAGTATTCCTCTATTCTCAACTAATCAAATACTAG	1329	0.3612	MDSRAEIVPVEKHAQVSEDNLKLHVEGSSTQLNEEKIENSKDSDENRKDSEYLQVHAHVEVAPPQDNPPHDQITEIDDNKDLVEVAPPQDNPPHDEIKEIDDNKDLVEVAPPQDNPPHDEITEIDDNPPQVHGEGVPLPENEENEDNKDIWNGYICGDKKSLTILLGIILGYMLLGIVAYFLNDRSKVSPLSKLVNGVYFVIVTLTSVGYGDIVPHTTLTKIMTSLYILIGFWMWNILVNHLMDYELEKLRTRLVRWCDNSPYKDFNNQKVRIYITIGVIFSFIIVGAFGAYFLETMSVVDSFYLSIVSISTVGYGDYSFETKAGRVFGCIWILIGTLIVNKAFEYLTGCLYNKMINGNAHKLSSDYSFIIDELVEMNVIEEWTKMNIIQTLENRKEARLTEARLREQTEARLREQTEASLMEADSSNTPLIVFLYSQLIKY	442

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal20g1133	442	Gene3D	-	254	354	-	-
	Lal20g1133	442	PANTHER	POTASSIUM CHANNEL, SUBFAMILY K	166	350	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Lal20g1133	442	PANTHER	OS01G0696100 PROTEIN	166	350	-	-
	Lal20g1133	442	MobiDBLite	consensus disorder prediction	18	50	-	-
	Lal20g1133	442	SUPERFAMILY	Voltage-gated potassium channels	162	258	-	-
	Lal20g1133	442	PRINTS	Two pore domain K+ channel signature	203	231	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Lal20g1133	442	PRINTS	Two pore domain K+ channel signature	311	320	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Lal20g1133	442	Pfam	Ion channel	280	340	IPR013099	-
	Lal20g1133	442	Pfam	Ion channel	168	244	IPR013099	-
	Lal20g1133	442	Gene3D	-	156	253	-	-
	Lal20g1133	442	MobiDBLite	consensus disorder prediction	29	50	-	-
	Lal20g1133	442	SUPERFAMILY	Voltage-gated potassium channels	266	356	-	-
	Lal20g1133	442	MobiDBLite	consensus disorder prediction	113	144	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal20g1133	Lal-Chr20	15665941	15668266	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal20g1133	166	363	Ion Channels	AT4G18160	32.710	4.86e-35	133

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal20g1133	K05389		-	cit:102629027	156.762