LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal20g1132	ATGCAACTTCTGGAAAATAAATGTAGGGCAGAAATTGTTCCAGTTGAGAAACATGCACAAGTTTCCGAAGATAATTTGAAACTACACGTAGAAGGTAGTTCAACACAACTTAATGAGGAAAAAATTGAGAATAGCAAGGATAGTGATGAGAATAGGAAGGATAGATTTAGTGGAAGTTGCTCCACCACAAGATATCCACCGCATGATGAAATTAAAGAAATTGATGATAATAAGGATTTAGTAGAAGTTGCTCCACCACAAGATAATCCACCGCATGATGAAATTACAGAAATTGATGATAATCCACCACAAGTACATGGAGAAGGTGTTCCCCTACCCGAGAATGAGGAAAATGAGGATAACAAGGATATATGGAATGGTTATATTTGTGGAGATAAGAAGTCACTAACAATACTATTGGGCATCATTCTCGGGTATATGCTACTTGGAATTGTAGCATATTTTCTTAATGATCGTTCAAAGGTCTCTCCCCTATCGAAGTTGGTCAATGGCGTTTATTTTGTTATAGTTACCCTCACTAGTGTGGGATATGGAGATATTGTTCCACACACAACGCTTACCAAAATCATGACTAGTCTTTACATTTTAATTGGTTTTTGGATGTGGAATATATTAGTGAATCATTTAATGGACTATGAATTAGAAAAACTAAGAACACGTTTGGTGAGATGGTGTGATAATTCTCCTTATAAAGATTTCAACAACCAAAAAGTGAGGATATATATAACTATTGGAGTTATATTTTCCTTCATTATTGTTGGAGCATTCGGAGCATACTTTTTAGAGACTATGAGTGTGGTTGATAGTTTTTACTTGTCAATTGTATCGATTTCCACAGTGGGTTATGGAGACTATAGCTTTGAAACGAAAGCTGGAAGAGTCTTTGGGTGTATATGGATTTTGATCGGCACACTTATAGTAAACAAAGCTTTCGAATACCTCACTGGTTGTTTATATAACAAGATGATTAATGGGAATGCTCACAAACTATCAAGTGACTATAGTTTTATCATAGATGAACTTGTTGAAATGAATGTGATAGAGGAATGGACCAAGATGAATATAATACAAACATTGGAAAATAGGAAGGAAGCACGTTTGACTGAAGCACGTTTGAGGGAACAAACTGAAGCACGTTTGAGGGAACAAACTGAAGCAAGTTTGATGGAAGCAGATAGCTCCAATACCCCACTAATAGTATTCCTCTATTCTCAACTAATCAAATACTAG	1251	0.3565	MQLLENKCRAEIVPVEKHAQVSEDNLKLHVEGSSTQLNEEKIENSKDSDENRKDRFSGSCSTTRYPPHDEIKEIDDNKDLVEVAPPQDNPPHDEITEIDDNPPQVHGEGVPLPENEENEDNKDIWNGYICGDKKSLTILLGIILGYMLLGIVAYFLNDRSKVSPLSKLVNGVYFVIVTLTSVGYGDIVPHTTLTKIMTSLYILIGFWMWNILVNHLMDYELEKLRTRLVRWCDNSPYKDFNNQKVRIYITIGVIFSFIIVGAFGAYFLETMSVVDSFYLSIVSISTVGYGDYSFETKAGRVFGCIWILIGTLIVNKAFEYLTGCLYNKMINGNAHKLSSDYSFIIDELVEMNVIEEWTKMNIIQTLENRKEARLTEARLREQTEARLREQTEASLMEADSSNTPLIVFLYSQLIKY	416

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal20g1132	416	Gene3D	-	130	227	-	-
	Lal20g1132	416	SUPERFAMILY	Voltage-gated potassium channels	240	330	-	-
	Lal20g1132	416	MobiDBLite	consensus disorder prediction	83	118	-	-
	Lal20g1132	416	Gene3D	-	228	328	-	-
	Lal20g1132	416	SUPERFAMILY	Voltage-gated potassium channels	136	232	-	-
	Lal20g1132	416	Pfam	Ion channel	254	314	IPR013099	-
	Lal20g1132	416	Pfam	Ion channel	142	218	IPR013099	-
	Lal20g1132	416	PANTHER	POTASSIUM CHANNEL, SUBFAMILY K	140	324	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Lal20g1132	416	MobiDBLite	consensus disorder prediction	34	57	-	-
	Lal20g1132	416	PRINTS	Two pore domain K+ channel signature	177	205	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Lal20g1132	416	PRINTS	Two pore domain K+ channel signature	285	294	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Lal20g1132	416	PANTHER	OS01G0696100 PROTEIN	140	324	-	-
	Lal20g1132	416	MobiDBLite	consensus disorder prediction	24	70	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal20g1132	Lal-Chr20	15654786	15656236	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal20g1132	140	337	Ion Channels	AT4G18160	34.597	4.11e-35	132

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal20g1132	K05389		-	cit:102629027	156.762