Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1122 ATGGACAACATGGGTTGGAATGCTTCACAACTTGAATCAAACACACCAATCATGTGCAGCACTCAGCAACAAGACCTTCAAGGAAGCTACAACATATCAAACTTAAGCTCAAGTTTTCACAATCAAATTCAAGAGATGCAAAAGGCTCAAACAAGTCATCAATATTCAAATTCTGAAACAAGTCATAAATATTCAGAAGCTTCTACAAATATGTCACAACATGCAGCAACCATGAGAGTGAAATTAGGAGGTGGAAGAGAGGGTTTAACATCTCAAAAATTTCACTCTTTTTCAGTCAATAACTACATGCAAGATTTCAACATGGCCTACCAACAATTTAACATCAATGGCACACAAAATGGAAAGTCTCTTGATTCTTTTGATTGCTTGTTTTCAGCTACTAATAGCAACACAGAAACTTCTGGTGAATTATCTGAGAGCAATTCTTCTAATGATGGAAGAAACAAAAACATGCAGTGTCCTCCTATCAATGATTTTGATGAAACATTGTCTCAAAGTTCCTCAGATCAACACATCAATCAAGGAAAAACATTACAATCCAACAACACTAATTGCTCAAATTATATGTTCAAAGCTGGTGCTAATTTCAAACTTATCTCAGAGAATCCACAAAAATCCAAGAAACCCAGATGGGAAAATAGTCCTTATTCATCAAACATCAACTTCCAGCAACCGAATTCATCGGTGTCTTCCGACATAGAAGAATCTGATCTAGAAGCCATAGCACAGATGAAGGAAATGATATATAGAGCTGCAGCATTTAGGCCAGTGAATTTGGTGTTGGAGAATGTTGAAAAGCCAAAGAGGAAGAATGTGAGGATATCAAATGATCCACAAACAGTGGCTGCAAGACAAAGAAGGGAAAGAATAAGTGATAGGATTAGGGTTTTACAAAACATGGTTCCTGGTGGAAGCAAAATGGACACTGCATCAATACTTGATGAGGCTGCAAACTACCTCAAGTTTCTTAGGTCACAGGTCAAGGCATTGGAAAATCTTGGCAACAAAGTTGGTAACATGACTTGTCCTCCTAATACTATTGCCTTCTCTTTCAACCCTTCTTTTCCCATGCAAACCCCTCCCACATATCGGTCAGGGTTTGAAGGATAG 1131 0.3793 MDNMGWNASQLESNTPIMCSTQQQDLQGSYNISNLSSSFHNQIQEMQKAQTSHQYSNSETSHKYSEASTNMSQHAATMRVKLGGGREGLTSQKFHSFSVNNYMQDFNMAYQQFNINGTQNGKSLDSFDCLFSATNSNTETSGELSESNSSNDGRNKNMQCPPINDFDETLSQSSSDQHINQGKTLQSNNTNCSNYMFKAGANFKLISENPQKSKKPRWENSPYSSNINFQQPNSSVSSDIEESDLEAIAQMKEMIYRAAAFRPVNLVLENVEKPKRKNVRISNDPQTVAARQRRERISDRIRVLQNMVPGGSKMDTASILDEAANYLKFLRSQVKALENLGNKVGNMTCPPNTIAFSFNPSFPMQTPPTYRSGFEG 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1122 376 Pfam Helix-loop-helix DNA-binding domain 291 330 IPR011598 GO:0046983
Lal20g1122 376 MobiDBLite consensus disorder prediction 207 238 - -
Lal20g1122 376 CDD bHLH_AtIND_like 282 340 - -
Lal20g1122 376 PANTHER TRANSCRIPTION FACTOR BHLH87 1 366 - -
Lal20g1122 376 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 287 340 IPR036638 GO:0046983
Lal20g1122 376 MobiDBLite consensus disorder prediction 136 187 - -
Lal20g1122 376 MobiDBLite consensus disorder prediction 216 238 - -
Lal20g1122 376 SMART finulus 287 336 IPR011598 GO:0046983
Lal20g1122 376 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 366 IPR045843 GO:0003700|GO:0006355
Lal20g1122 376 Coils Coil 320 340 - -
Lal20g1122 376 Gene3D - 286 348 IPR036638 GO:0046983
Lal20g1122 376 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 281 330 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1122 Lal-Chr20 15509394 15510524 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1122 201 367 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 66.667 1.42e-63 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal20g1122 HLH 6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1122 - - lang:109336915 599.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1122 20 15509394 15510524 Lal20g1122 20 15509394 15510524 ECH
Lal25g0311 25 2140449 2141837 Lal20g1122 20 15509394 15510524 PCT
Lal10g1111 10 17935014 17936988 Lal20g1122 20 15509394 15510524 PCT
Lal8g0270 8 1816945 1818210 Lal20g1122 20 15509394 15510524 PCT
Lal20g1122 20 15509394 15510524 Lal25g0311 25 2140449 2141837 PCT
Lal20g1122 20 15509394 15510524 Lal10g1111 10 17935014 17936988 PCT
Lal20g1122 20 15509394 15510524 Lal8g0270 8 1816945 1818210 PCT