Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1105 ATGGCTTCCTTCAAGAATGTAACAGGATTTGCAATGGATTTCTCATGGAATTGTTTGAAAGATTTTGATATCACTTCTTTATGCTTTCAAAGAAGCATAATAGACATTGTAAATCTAGTTTTTATCTCTGTTTTCTATATTTCTTTGGTTATAAGTATAATCAAAAGATGTTCTGAAAGGAGTAGCAACAAAAAGAAATGGGTTTTCAAAGTTGCTTCAATCTTCTGTGTTCTTGTTAGCATTGCATTTATTAGTATAGGTTTGTTGAATTCAATATCCAAAACTAGTAACTTTAAGCATTTGGGTTTATTAGAATGCATTGTGAAAGGGTTCATTTGGATTTCTTTTACACTTTCTTTGCTTCTTCAGAGAAACAAATTGATAAAGATTGTAAACTCTATCTGGTGGGTTTCAATCTTTGTGTTAGTTTCAGCTCTAAACATTGAAATTCTGTTCAAAGATCATGTAATTGAAATTTTTGACATAGTACAATGGGTTATACACTTCTTACTTCTCTTCTGTTCCCTCCAAAATCTTGGGTATTTTGTCGGTCAAACTGTTCCGGATACATCGAGTTTATCGGAGCCGTTGCTAGATCGAAAAGTTGAAAATAAACATACTGGACTAGCTCATGCTTCCTTGCTCAGCAAGTTATCTTTCTCTTGGGTTAATTCCTTACTCAGTTTGGGTTACTCTAAGCCGCTTGCGCTTGACGACATTCCTTCTCTTGTTTCTGAAGATGAAGCTGACTCGGCGTACCGAAAATTCATGCAAGCATGGGTATCCCTTTCAAGGGAGAGGGGCAAGAACAATACTAAAAACTTGGTTTTTTGGTCTGTAGTTAGAACTTACTCAAAAGAGAACATATTGAATGCATTTTATGCATTATTGAGAACTATTGCTGTTGTAGTTTCTCCTCTGATACTCTATGCTTTTGTTAACTACTCAAATAGAACCGAGGCCGAACTAAAAGAAGGTATTTCGATAATCGGTTTTCTGATTCTGAGCAAAGTGGTGGAATCATTGTCTCAAAGACATTGGTGTTTTAACTCAAGGAGGTCAGGAATGAAAATGAGATCAGCTCTTATGGTGGCAATATATCAAAAACAGCTCAAGCTTTCTAGCTCGGCTAGGAGAAGGCACTCGGCAGGAGAAATCGTGAATTACATCGCGGTTGATGCATATCGTATGGGAGAATTCCCATGGTGGTTTCATTTATTATGGTCTTGTGTGTTGCAAATATTGCTGTCTGTTAGTGTCCTTTTCGGCGTTGTCGGTCTTGGCGCTCTTCCTGGTTTAGTCCCTCTTCTCATTTGTGGAATTCTAAATGTACCATTTGCAAAGATCATACAAAATTGCCAATCGCAATTTATGATTGCACAAGACGAGCGTCTAAGATCAACTTCCGAAATTCTAAATAGCATGAAAATCATTAAGCTGCAATCATGGGAGGACAAGTTCAAAGACTTAATCGAAACGCTACGTTCTAAAGAGTTCGTATGGTTGTCTAAGACAGAAATGATGAAAGCTTATGGATCATTTCTTTATTGGATGTCTCCTACCATTGTTTCTGCAGTTATTTTCCTTGGATGTGTACTTTTACAAAGTGCTCCATTGAATGCTGGAACAATTTTCACAGTTCTTGCAACCTTGAGAATCATGTCCGAACCTGTTCGTATGATACCCGAGGCTCTATCTGTTTTGATCCAAGTTAAGGTCTCTTTCGATCGCCTCAATACCTTTTTGCTCGATGATGAGCTAAACAACGACGATGTTGGAAGAGATGTAAAGAACTTTTCAGTTAATGGTAATGCTGTGGAAATTCAAGGAGGCAACTTCATTTGGAATCAGGAATCGTTGTCGCCGACTTTAACAAATGTGAATTTAGAAATAAAAAGGGGACAGAAAATAGCAGTTTGTGGACCAGTTGGTGCTGGAAAATCATCTCTATTGTATTCAATACTTGGAGAGATTCCAAAACTTTCAGGAACAGTTAAAATCAATGGCACCCTGGCCTATGTTTCACAAACTTCATGGATACAAAGCGGGACGATTCGAGCTAATATACTATTCGGAAAGCCAATGGAAAAAACAAGATATGAGAATGCGATTAAAGTTTGTGCCTTAGAAAATGATCTTAATGATTTTAGCCATGGAGATCTCACAGAAATAGGCCAGAGAGGGATTAACATGAGTGGAGGACAAAAACAAAGGATTCAGCTAGCTCGAGCCGTATACAACGACGCTGACATCTATCTCCTCGACGATCCATTCAGCGCAGTCGATGCTCACACTGCTTCCATTCTGTTCAACGAATGTATCGTTACCGCTCTAAGACATAAAACAGTTATATTAGTTACTCATCAAGTAGAGTTTCTCTCAGAGGTTGATAAAATCCTGGTAATGGAGGGAGGAAAAGTTACTGAATCAGGTAATTATAAGGATCTTCTAACAGCTGGAACAGCCTTTGAACAACTTGTGAGTGCTCACAAAGATGCAATGAAAGAATTGGATCAAAATAATGAACACAAAACAAGTTCTGAAAATGAAATTATAGCTTATACAGAAGAATCTCAAGATGAGTGGAGTTCTATAAAGGGTCAACTTGGGATACAGCTTACACAAGAGGAAGAAAAAGAGATTGGTGATGCTGGATGGAAGCCATTCTGGGATTATATCTCTTTTTCAAGAGTGTTAACCTTGCTGTGTTTGATGATATTAGCACAATCTGTATTTGTTGCTTTGCAGACTGCATCGACATTTTGGCTCGCGTTAGCTATCGAAATACCGAAAGTAACAAGTGGCACCTTGGTTGGAGTTTACGCAATAGTTTCACTTCTAAGTTCTGTGTTTGTATATCTAAGGTCTTCCTATGGTGCACATCTTGGACTAAAAGCTTCTGCAGCCTTCTTCTCTAGTTTCACTAAGGCGATTTTCGCTGCTCCTATGTTGTTCTTCGACTCAACCCCGGTCGGAAGGATTTTAATCCGTGCCTCATCAGATTTGAGTATTTTGGACTTTGATGTACCTTATTCCACTCTTTTTGTAGCATCTGTAAGTATTGAAATTCTAGTGACAATTGGTGTAATGGCTTCAGTTACATGGCAAGTTCTCATCATCGCTATTCCAGCTATGATCGCATCGAAATATGTTCAGGGATACTATCAAGCCTCTGCAAGGGAACTAATAAGGATCAATGGAACCACGAAAGCTCCGGTCATGGATTTTACGGCTGAGACATCACTTGGAGTTGTGAATGTAAGAGCATTCAACATGGTGGATAGATTTTTCAAGAACTACCTAAAGCTTGTGGACACAGATGCAACACTATTCTTTCATTCTAATGTTACCATGGAATGGTTAGTTTTAAGGATTGAGATACTTCAAAATTTGACAGTCTTCACTGCAGCATTGTTACTTATTCTACTTCCTAAGGGATACATACCAACAGGTCTTGTAGGACTGTCTCTTTCTTATGCTTTCGGATTGACAGGAGCTCAAGTCTTTTGGACTAGAATGTTCTGCAATCTGTCAAACTATATTATCTCAGTCGAAAGGATCAAACAATTCATTCATATACCGGCCGAGCCATCTGCCGTTGTCGCAGATAACAGGCCTCCATCTTCATGGCCTTCCAAGGGTAGGATTGATCTTCAATCACTAGAGATTAGATATCGTCCGAACGCTCCATTAGTCCTGAAGGGTATCACTTGTACGTTTAACGAAGGGAATAGAGTCGGCGTTGTCGGAAGGACCGGAAGTGGAAAAACAACACTAATAAGTGCTTTGTTTCGCTTAGTTGAGCCTGCAAGTGGTAATATTATTATTGATGGGATTAACATATGCTCAATTGGGTTGAAGGATTTGAGAATGAAACTAAGCATTATCCCTCAAGAGCCAACACTTTTCAAAGGCAGCATTAGAACAAACTTGGATCCCTTAGGCCTTTACTCAGATGATGAAATATGGAAGGCTTTAGAGAAATGCCAGCTTAAGGAAACAATCACTAGTCTACCAAGTCTCCTAGACTCTTCAGTGAGTGATGAAGGTGGTAATTGGAGCTTGGGACAAAGGCAATTGTTTTGTCTAGGAAGAGTATTACTTAAAAGAAGCAAAATTCTTGTTCTTGATGAAGCTACTGCATCCATTGACTCTGCCACAGATGCAACTTTACAAAGAGTTATAAGGCAAGAATTTGCAGAAAGTACAGTTATAACAGTTGCTCACAGAGTTCCAACTGTAATAGATAGTGACATGGTCATGGTCCTTTCTTATGGGAAAGTAGTAGAATATGATGAGCCTTCAAAGCTAATGGGAACAAGTTCTTCATTCTCTAAGTTGGTAACTGAATATTGGTCTAGCTGCACCAAGAAACATTAG 4380 0.3863 MASFKNVTGFAMDFSWNCLKDFDITSLCFQRSIIDIVNLVFISVFYISLVISIIKRCSERSSNKKKWVFKVASIFCVLVSIAFISIGLLNSISKTSNFKHLGLLECIVKGFIWISFTLSLLLQRNKLIKIVNSIWWVSIFVLVSALNIEILFKDHVIEIFDIVQWVIHFLLLFCSLQNLGYFVGQTVPDTSSLSEPLLDRKVENKHTGLAHASLLSKLSFSWVNSLLSLGYSKPLALDDIPSLVSEDEADSAYRKFMQAWVSLSRERGKNNTKNLVFWSVVRTYSKENILNAFYALLRTIAVVVSPLILYAFVNYSNRTEAELKEGISIIGFLILSKVVESLSQRHWCFNSRRSGMKMRSALMVAIYQKQLKLSSSARRRHSAGEIVNYIAVDAYRMGEFPWWFHLLWSCVLQILLSVSVLFGVVGLGALPGLVPLLICGILNVPFAKIIQNCQSQFMIAQDERLRSTSEILNSMKIIKLQSWEDKFKDLIETLRSKEFVWLSKTEMMKAYGSFLYWMSPTIVSAVIFLGCVLLQSAPLNAGTIFTVLATLRIMSEPVRMIPEALSVLIQVKVSFDRLNTFLLDDELNNDDVGRDVKNFSVNGNAVEIQGGNFIWNQESLSPTLTNVNLEIKRGQKIAVCGPVGAGKSSLLYSILGEIPKLSGTVKINGTLAYVSQTSWIQSGTIRANILFGKPMEKTRYENAIKVCALENDLNDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTASILFNECIVTALRHKTVILVTHQVEFLSEVDKILVMEGGKVTESGNYKDLLTAGTAFEQLVSAHKDAMKELDQNNEHKTSSENEIIAYTEESQDEWSSIKGQLGIQLTQEEEKEIGDAGWKPFWDYISFSRVLTLLCLMILAQSVFVALQTASTFWLALAIEIPKVTSGTLVGVYAIVSLLSSVFVYLRSSYGAHLGLKASAAFFSSFTKAIFAAPMLFFDSTPVGRILIRASSDLSILDFDVPYSTLFVASVSIEILVTIGVMASVTWQVLIIAIPAMIASKYVQGYYQASARELIRINGTTKAPVMDFTAETSLGVVNVRAFNMVDRFFKNYLKLVDTDATLFFHSNVTMEWLVLRIEILQNLTVFTAALLLILLPKGYIPTGLVGLSLSYAFGLTGAQVFWTRMFCNLSNYIISVERIKQFIHIPAEPSAVVADNRPPSSWPSKGRIDLQSLEIRYRPNAPLVLKGITCTFNEGNRVGVVGRTGSGKTTLISALFRLVEPASGNIIIDGINICSIGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKALEKCQLKETITSLPSLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRSKILVLDEATASIDSATDATLQRVIRQEFAESTVITVAHRVPTVIDSDMVMVLSYGKVVEYDEPSKLMGTSSSFSKLVTEYWSSCTKKH 1459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1105 1459 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1218 1450 IPR003439 GO:0005524
Lal20g1105 1459 CDD ABCC_MRP_domain1 606 806 - -
Lal20g1105 1459 Gene3D ABC transporter type 1, transmembrane domain 264 583 IPR036640 GO:0005524|GO:0016021
Lal20g1105 1459 Gene3D ABC transporter type 1, transmembrane domain 866 1197 IPR036640 GO:0005524|GO:0016021
Lal20g1105 1459 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 608 829 IPR003439 GO:0005524
Lal20g1105 1459 Pfam ABC transporter 624 758 IPR003439 GO:0005524
Lal20g1105 1459 Pfam ABC transporter 1233 1381 IPR003439 GO:0005524
Lal20g1105 1459 SMART AAA_5 633 806 IPR003593 -
Lal20g1105 1459 SMART AAA_5 1242 1435 IPR003593 -
Lal20g1105 1459 CDD ABCC_MRP_domain2 1214 1434 - -
Lal20g1105 1459 CDD ABC_6TM_ABCC_D1 290 578 IPR044746 GO:0140359
Lal20g1105 1459 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 904 1166 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal20g1105 1459 SUPERFAMILY ABC transporter transmembrane region 887 1196 IPR036640 GO:0005524|GO:0016021
Lal20g1105 1459 Gene3D - 584 855 IPR027417 -
Lal20g1105 1459 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1206 1449 IPR027417 -
Lal20g1105 1459 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 65 1452 - -
Lal20g1105 1459 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 601 828 IPR027417 -
Lal20g1105 1459 Pfam ABC transporter transmembrane region 934 1163 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal20g1105 1459 Pfam ABC transporter transmembrane region 300 557 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal20g1105 1459 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 289 570 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal20g1105 1459 ProSitePatterns ABC transporters family signature. 731 745 IPR017871 GO:0005524
Lal20g1105 1459 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 65 1452 - -
Lal20g1105 1459 SUPERFAMILY ABC transporter transmembrane region 277 584 IPR036640 GO:0005524|GO:0016021
Lal20g1105 1459 Gene3D - 1199 1450 IPR027417 -
Lal20g1105 1459 CDD ABC_6TM_ABCC_D2 898 1191 IPR044726 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1105 Lal-Chr20 15228512 15235370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1105 606 851 Calmodulin-binding Proteins AT2G36910 27.444 1.23e-23 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1105 - - gmx:100784827 2177.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1105 20 15228512 15235370 Lal20g1105 20 15228512 15235370 ECH