Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1101 ATGAATAGAGAGCAACAGAAGCGAGGGAAGCAAGAGAATGGCTCCGATGGCACCGAGAAGGTTATTGTTGCTGTTAAGGCATCAAGGGAAATTCCAAAAACTGCTCTTGTTTGGTCTTTGACTCATGTTGTTCAACCTGGTGATTGCATTACACTGATAGTTGTTCTTCCTTCACAAAGTTCAGGGAGAGGATTATGGGGTTTTCCAAGATTTGGTAGTGACTGTGCCAATGGCAATAAGAAGTGTCCTACAGGAACATTTTTAGAGCAGAAGAGTGATATAACCGATTGTTGCTCGCAGATGATACTTCAGCTCCAAGATGTCTATGACCCAAATAAGGTTAATGTTCGGATTAAAATTGTTTCCGGATCACCTTGTGGAGCAGTGGCTGCAGAAGCTAAGAAAGCTCAAGCCAGTTGGGTTGTATTAGACAAACAGCTCAAACACGAGGAAAAGCGATGCATGGAAGAACTGCAATGTAACATTGTGGTTATGAAACGTTCCCAACCAAAAGTACTCCGGTTGAATTTGATCGGACCACAGAAGAAGGATCATGAAGAAATAGGTCCTTCACCTTCTGAGCAAGATGAGATGCCTGAAAAGCTAACCAAAAAGAAGTGTGATTCTTTAAATTCTATTAAGGAACCGGTTGTCACTCCAACTAGCAGCCCAGAGCTAGGGACACCTTTCACTGCAACTGAAGCTTGTACTTCATCGGTTTCAAGTTCTGATCCCGGAACTTCACCGTTCTTTATCTCAGACATGAATGGTGAGTTGAAGAGAGAGGAAACAATCAAGGAGAATAAAGAACCTGATGATACTAATTCAGATACAGAAAGTGAAAGTCGGTCTACATCTTCGGCAAGCATGAGATTCCAGCCGTGGATCACAGATTTACTTTTACATCAACGGACATCTCAACGCAATGTGGAAAGATCAGAGATATCATCTCATGATATGTCTCATCATTCATCTACAACCCGAGCATTGCTAGAAAAGTTTTCAAGGCTTGATAGAGGAGCTGGAATTGAAATGTCAACTTACGGAACTGACTCGGATTTCAGTGGAAATCTAAGAGAAGCAATGGCATTATCGAGAAATGCCCCACCTGGTCCACCTCCGTTATGCTCAATATGTCAACACAAGGCACCGGTTTTTGGGAAACCTCCGAGGTGGTTCAGCTATGCCGAGTTAGAACTTGCTACTGGTGGATTTTCACAAGCTAACTTCTTGGCCGAGGGAGGATTTGGATCTGTCCACAGAGGGGTTCTTCCAGAGGGACAAGTCATTGCTGTCAAGCAACATAAGTTGGCTAGCTCTCAGGGTGATGTTGAGTTTTGCTCAGAGGTCGAAGTCCTGAGCTGTGCTCAACACCGAAATGTTGTTATGCTAATTGGGTTCTGTATAGAGGATAAAAGAAGATTACTGGTTTATGAGTACATATGCAATGGATCATTGGATTCACATTTATATGGGCGACAACGGGAACCATTAGAATGGTCTGCACGGCAAAAAGTTGCGGTTGGAGCTGCTCGTGGGTTACGTTATCTTCATGAAGAGTGCAGAGTTGGTTGCATTATCCACCGCGATATGCGGCCAAACAACATTCTCATAACCCATGATTTTGAACCACTGGTTGGTGATTTTGGACTGGCAAGGTGGCAGCCTGATGGAGACACCGGTGTCGAAACTCGAGTAATCGGAACTTTTGGGTATTTGGCTCCAGAATATGCGCAAAGTGGCCAAATCACTGAAAAAGCTGATGTTTATTCCTTCGGGGTGGTACTAGTGGAGCTTGTTACCGGGAGAAAAGCTGTGGATCTCAGTCGGCCGAAGGGACAGCAATGTCTTACCGAGTGGGCGCGGCCGTTGTTAGAAAAATATGCCATTGAGGAGCTGATTGATCCGAGACTGAGAAACCACTATTCCGAAAATGAAGCCTACTGTATGCTACATGCTGCATCATTGTGCATACGGCGAGATCCTCATTCTAGACCACGCATGTCACAGGTTCTCCGAATACTCGAGGGTGACATGATCATGGACACGAGTTACATTTCAACTCCGGGTTATGATGCGGGTAACCGAAGTGGCCGAATGTGGTCAGAGCCGTTGCAGAGACAGCACTGGGATAGTGGTCCCCTAGTAGAAGAGTCACTGGAATCATTCAGTGGGAAACTATCCCTTGATAAATACAGACCTACCTATTGGGATAGGGACAAGGGTAGAAGGACATCATGTGAAGATGACATATAA 2256 0.4477 MNREQQKRGKQENGSDGTEKVIVAVKASREIPKTALVWSLTHVVQPGDCITLIVVLPSQSSGRGLWGFPRFGSDCANGNKKCPTGTFLEQKSDITDCCSQMILQLQDVYDPNKVNVRIKIVSGSPCGAVAAEAKKAQASWVVLDKQLKHEEKRCMEELQCNIVVMKRSQPKVLRLNLIGPQKKDHEEIGPSPSEQDEMPEKLTKKKCDSLNSIKEPVVTPTSSPELGTPFTATEACTSSVSSSDPGTSPFFISDMNGELKREETIKENKEPDDTNSDTESESRSTSSASMRFQPWITDLLLHQRTSQRNVERSEISSHDMSHHSSTTRALLEKFSRLDRGAGIEMSTYGTDSDFSGNLREAMALSRNAPPGPPPLCSICQHKAPVFGKPPRWFSYAELELATGGFSQANFLAEGGFGSVHRGVLPEGQVIAVKQHKLASSQGDVEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDSHLYGRQREPLEWSARQKVAVGAARGLRYLHEECRVGCIIHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLSRPKGQQCLTEWARPLLEKYAIEELIDPRLRNHYSENEAYCMLHAASLCIRRDPHSRPRMSQVLRILEGDMIMDTSYISTPGYDAGNRSGRMWSEPLQRQHWDSGPLVEESLESFSGKLSLDKYRPTYWDRDKGRRTSCEDDI 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1101 751 Gene3D Phosphorylase Kinase; domain 1 377 480 - -
Lal20g1101 751 MobiDBLite consensus disorder prediction 178 211 - -
Lal20g1101 751 Gene3D Transferase(Phosphotransferase) domain 1 481 686 - -
Lal20g1101 751 ProSitePatterns Tyrosine protein kinases specific active-site signature. 526 538 IPR008266 GO:0004672|GO:0006468
Lal20g1101 751 MobiDBLite consensus disorder prediction 178 289 - -
Lal20g1101 751 ProSiteProfiles Protein kinase domain profile. 405 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g1101 751 MobiDBLite consensus disorder prediction 256 279 - -
Lal20g1101 751 MobiDBLite consensus disorder prediction 214 250 - -
Lal20g1101 751 PANTHER OS01G0253100 PROTEIN 16 710 IPR045271 GO:0004714|GO:0006468
Lal20g1101 751 PANTHER KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN 16 710 - -
Lal20g1101 751 CDD STKc_IRAK 411 677 - -
Lal20g1101 751 Pfam Protein tyrosine and serine/threonine kinase 409 674 IPR001245 GO:0004672|GO:0006468
Lal20g1101 751 MobiDBLite consensus disorder prediction 307 321 - -
Lal20g1101 751 MobiDBLite consensus disorder prediction 307 326 - -
Lal20g1101 751 SUPERFAMILY Protein kinase-like (PK-like) 389 683 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1101 Lal-Chr20 15172362 15178220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1101 385 679 Trihelix Transcription Factor Family AT1G70460 53.642 1.35e-102 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Lal20g1101 PK_Tyr_Ser-Thr 5.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1101 - - gmx:100816340 1304.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1101 20 15172362 15178220 Lal20g1101 20 15172362 15178220 ECH
Lal20g1101 20 15172362 15178220 Lal1g1356 1 15390935 15396773 LSH
Lal25g0320 25 2192661 2197967 Lal20g1101 20 15172362 15178220 PCT
Lal8g0277 8 1861255 1867022 Lal20g1101 20 15172362 15178220 PCT
Lal20g1101 20 15172362 15178220 Lal25g0320 25 2192661 2197967 PCT
Lal20g1101 20 15172362 15178220 Lal8g0277 8 1861255 1867022 PCT