Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1054 ATGGTGTCAATCCAAGATGAAGTAGGACCCACTGTGATTGCCATCGACGGAGGCCGGAATAGCCAACATGCTGTTAAATGGGCCGTCGATCACCTTCTCATGAAAGACACCTCTTGTGTCCTCATTCATGTTCGTACTAAGGCCTTGCATCCCCATGATGTTGATCATGTCCCTAAAGATGGTCGACCTCCAACTCAAGAAGAATTGCACCAATTTTTTCTTCCCTTCCGGGGATTTTGTGCTCGAAAAGGGATTGAAGCAAAGGAATTGGTTCTGCATGACATTGATGTTCCAAGTGCTCTTACTGACTATGTTATCAAAAACTCTATTTCTAATATTGTTGTTGGTGATTCCCATTGGAATGCTCTTATAAGGAGATTTAGAAATGCAGATGTGCCAACCAGCTTAGCAAAGTCTTTGCCGAAGTCTTGCATATTATATGTTATATCAAAAGGAAAAATGCAAACCATTCGTCCTACAGGTCAACCTCAGAATATTGATGTTACACCAACAAAATCTATGAGAGATTTAGTCACTATCTTGCAAAATTCTCCTTTGGTTCAAACAAATAATGGTACTCCCGATGCCCCTGATTTTGAAGATATAAACAGAAAAGACAATGGTTGGGTATCTTTACATGAGCCTAAAGGTGCTATACATAAGTTCAACGAAGATCTTTATTCACCAACACTATCAGTTGAAAGCTCCACATCACAATGTTCATCAAATCAAAGTACTCCCGACAACAGTGATAGTTCAGGGAAACTTGGTTCTCAGTTGATTGATAACTCACAGTCTCCTTCAAAACCCCCAATATGCTTGGAGAAATCAATAAGGAAATTGAAACTAGAACTGAAGAAGACAATGGAGCAGTATAACTTGGTTTCCAGAGAAGCTGTTTTAGCAAGACAAAGGGCAATGGAGCTTGAAAAGTATATGCAAGAAAAAGAACGCGATGTAGAAAAAGCTAGGCTAGCTGAAGAGGCTGCATTGGCTTTGGCAGAGGTAGAGAGGCAGAAAACCAAGGCAGCTAATGAGTCAGAAGAAATGTCAAAACGCCTGGCAGAAATGGAAAACGAAAAGAGAAATCAAGCCGAATTAAGAGCAGTGCACGAGAAAGAAGAGCGAAAAGCATTAAATGCAATAACATATAATAAAATTTCATATAGAAAATATGATATTAAAGAAATTGAAGTTGCGACTCACTACTTTGACAGTGCTCTACAAATTGGTGAAGGTGGGTATGGACCAGTTTTTAAAGGAGTGCTTGATCACACTGTTGTTGCCATTAAGGCTCTGAGACCAGACATTACATCCCAAGGGGAAAAGCAATTTCAACAAGAGGTTGATGTATTGAGCAACATACGACATCCGAACATGGTTCTCCTTCTAGGTGCATGCCCAGAGTTCGGATGCCTTGTGTATGAGTACATGGAAAATGGAAGCTTAGATGATCGGCTTTTCCAGAAAGACAACACCCCACCAATTCCATGGAAAATTCGATTCAGAATTGCATCCGAAATCGCCACTGGGCTTCTTTTCCTTCACCAAACAAAGCCCGAGCCACTGGTGCATCGTGACCTCAAACCAGGAAACATTCTCTTAGACAGGAACTATAAGAGCAAGATCAGTGATGTTGGCTTGGCTCGTCTTGTTCCCCCTTCTGTAGCCAACAAAAGCACCGAATATCTCATGACAACTGCAGCTGGAACATTTTGCTACATTGACCCAGAGTATCAACAGACAGGGTTGTTGGGTGTAAAATCAGACATATACTCATTTGGTGTTATGCTGCTACAGATTCTTACCGGAAAACCTCCTATGGGTTTATCCCATTTGGTTGAAAATGCTATCAAGAAAAATGAAATCTCAGAAATTCTTGATCCGAATGTGACAGATTGGCCTGTTGAGGAGGCTCTGTCATGTGCTAAGTTGGCCTTAAAGTGTTGTGAGTTAAGAAAAAGGGACAGACCAGATCTTGGTACTGTAATTTTACCAGAGATGAATAGACTCAGAGATCTTGGAGGAGCCATTGATTCTGATGGATAA 2049 0.4095 MVSIQDEVGPTVIAIDGGRNSQHAVKWAVDHLLMKDTSCVLIHVRTKALHPHDVDHVPKDGRPPTQEELHQFFLPFRGFCARKGIEAKELVLHDIDVPSALTDYVIKNSISNIVVGDSHWNALIRRFRNADVPTSLAKSLPKSCILYVISKGKMQTIRPTGQPQNIDVTPTKSMRDLVTILQNSPLVQTNNGTPDAPDFEDINRKDNGWVSLHEPKGAIHKFNEDLYSPTLSVESSTSQCSSNQSTPDNSDSSGKLGSQLIDNSQSPSKPPICLEKSIRKLKLELKKTMEQYNLVSREAVLARQRAMELEKYMQEKERDVEKARLAEEAALALAEVERQKTKAANESEEMSKRLAEMENEKRNQAELRAVHEKEERKALNAITYNKISYRKYDIKEIEVATHYFDSALQIGEGGYGPVFKGVLDHTVVAIKALRPDITSQGEKQFQQEVDVLSNIRHPNMVLLLGACPEFGCLVYEYMENGSLDDRLFQKDNTPPIPWKIRFRIASEIATGLLFLHQTKPEPLVHRDLKPGNILLDRNYKSKISDVGLARLVPPSVANKSTEYLMTTAAGTFCYIDPEYQQTGLLGVKSDIYSFGVMLLQILTGKPPMGLSHLVENAIKKNEISEILDPNVTDWPVEEALSCAKLALKCCELRKRDRPDLGTVILPEMNRLRDLGGAIDSDG 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1054 682 CDD STK_N 10 152 - -
Lal20g1054 682 Gene3D Transferase(Phosphotransferase) domain 1 478 674 - -
Lal20g1054 682 Pfam Universal stress protein family 12 145 IPR006016 -
Lal20g1054 682 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 11 675 - -
Lal20g1054 682 ProSiteProfiles Protein kinase domain profile. 404 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g1054 682 CDD STKc_IRAK 410 664 - -
Lal20g1054 682 SMART serkin_6 404 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g1054 682 MobiDBLite consensus disorder prediction 233 271 - -
Lal20g1054 682 Gene3D HUPs 11 147 IPR014729 -
Lal20g1054 682 Pfam Protein kinase domain 409 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g1054 682 Gene3D Phosphorylase Kinase; domain 1 382 477 - -
Lal20g1054 682 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 12 133 - -
Lal20g1054 682 Coils Coil 278 377 - -
Lal20g1054 682 PANTHER OS02G0152300 PROTEIN 11 675 - -
Lal20g1054 682 MobiDBLite consensus disorder prediction 233 272 - -
Lal20g1054 682 SUPERFAMILY Protein kinase-like (PK-like) 381 664 IPR011009 -
Lal20g1054 682 ProSitePatterns Serine/Threonine protein kinases active-site signature. 523 535 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1054 Lal-Chr20 14436097 14443918 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1054 5 675 Receptor kinase-like Gene Family AT1G17540 48.787 0.0 643
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Lal20g1054 Pkinase 2.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1054 - - lang:109347877 1270.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1054 20 14436097 14443918 Lal10g1084 10 17762208 17766584 PCT