Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1047 ATGGACTCGAAAGCACAGTATAATCCTCGCACCGTTGAAGAAGTTTTTAGGGATTTCAAAGGCCGAAGAGCTGGTCTCATTAAAGCTCTCACCACTGATGTTGAAGAATTCTACAGTCAATGTGATCCCGAAAAGGAGAACTTGTGCTTATACGGCTTTCCTAGTGAGCAGTGGGAAGTAAATTTACCGGCTGAAGAAGTTCCGCCCGAGCTTCCTGAGCCTGTCCTGGGCATTAACTTTGCTAGGGATGGCATGCAAGAAAAAGACTGGTTATCTTTAGTTGCTGTCCACAGTGATGCATGGTTACTTGCTATTGCCTTCTATTTTGGTGCCAGATTTGGGTTTGATAAGGCTGACAGGAAACGCCTGTTCAATATGATTAATGAACTACCAACAATTTTTGAAATTGTTACTGGTGCAGCAAAGAAACAAGTTAAGGAGAAGTCGTCAGTTTCAAACCACAGCGGCAGCAAATCTAAGTCCAGCTCTAAATCACGGGCTCTGGAATCTCAGGGTAGACAATCAAAGGCCTTACCATTAAAAGACGAGGACGATGATCTGGTTGATGAAGAAGACGAAGATGAACATGGAGAGGCCTTATGTGGTGCATGTGGTGAGAATTACGGCACTGATGAATTCTGGATTTGCTGCGACATCTGCGAGAAGTGGTTCCATGGGAAATGTGTGAAGATCACTCCGGCTAAGGCGTATCATATCAAACAATACAAGTGTCCGTCATGCAGTAACAAGAGAGCTCGCCCTTGA 765 0.4458 MDSKAQYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYSQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLAIAFYFGARFGFDKADRKRLFNMINELPTIFEIVTGAAKKQVKEKSSVSNHSGSKSKSSSKSRALESQGRQSKALPLKDEDDDLVDEEDEDEHGEALCGACGENYGTDEFWICCDICEKWFHGKCVKITPAKAYHIKQYKCPSCSNKRARP 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1047 254 Pfam PHD-finger 201 250 IPR019787 -
Lal20g1047 254 MobiDBLite consensus disorder prediction 150 172 - -
Lal20g1047 254 CDD PHD_AL_plant 200 250 IPR044104 -
Lal20g1047 254 SUPERFAMILY FYVE/PHD zinc finger 190 251 IPR011011 -
Lal20g1047 254 Pfam Alfin 11 138 IPR021998 GO:0006355|GO:0042393
Lal20g1047 254 ProSitePatterns Zinc finger PHD-type signature. 201 247 IPR019786 -
Lal20g1047 254 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 6 254 - -
Lal20g1047 254 ProSiteProfiles Zinc finger PHD-type profile. 198 250 IPR019787 -
Lal20g1047 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 249 IPR013083 -
Lal20g1047 254 MobiDBLite consensus disorder prediction 147 191 - -
Lal20g1047 254 PANTHER CPG BINDING PROTEIN 6 254 IPR045104 GO:0006355|GO:0042393
Lal20g1047 254 SMART PHD_3 200 248 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1047 Lal-Chr20 14332126 14339713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1047 5 253 Alfin-like Transcription Factor Family AT3G42790 74.297 2.91e-122 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lal20g1047 Alfin 4.6e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1047 - - gmx:100794662 432.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1508 17 16461772 16466748 Lal20g1047 20 14332126 14339713 ECH
Lal4g1532 4 19424366 19428781 Lal20g1047 20 14332126 14339713 ECH
Lal20g1047 20 14332126 14339713 Lal20g1047 20 14332126 14339713 ECH
Lal20g1047 20 14332126 14339713 Lal18g0134 18 1085727 1090731 LSH
Lal25g0350 25 2374991 2377996 Lal20g1047 20 14332126 14339713 PCT
Lal10g1079 10 17747486 17751145 Lal20g1047 20 14332126 14339713 PCT
Lal8g0296 8 1986896 1990757 Lal20g1047 20 14332126 14339713 PCT
Lal20g1047 20 14332126 14339713 Lal25g0350 25 2374991 2377996 PCT
Lal20g1047 20 14332126 14339713 Lal10g1079 10 17747486 17751145 PCT
Lal20g1047 20 14332126 14339713 Lal8g0296 8 1986896 1990757 PCT