Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1029 ATGAACAATTGGTTAGGGTTCACACTGAGTCCTCACTTGAGGCTTAATGAAGATTTTGAGAGAGAAAACCAAGACCATGGATCTCATCATCTTCATCCTCATCACTTATCTGTTATGCCTTTGCATTCTGATGGTTCTCTTTGTGTTACTGACTCATTTGGGCACCACTCAGATCCACCTGAAGAATGGAGATATGATAATGCAATAGGTGGAGGTAATTCAAGTGAAGAAGGTCCAAAACTTGAAGACTTCTTGGGTTGCTACTCAAACTCCTCTATTGCTGAAACCAAAGTCTTTTGCCAACAAGACACAACACAACAACATGACCAAAACCAAAACCAAAACATTTCAAAAATTAATGTCAATATGGCACCAAGCTTTAGCACCAACAACAATACTGAGATTGAAACTGTGAAGAATAATAATCTCACAAACCAATCTTCTATGATCCAATCTTTTCATGCATATAATGATAGTAGCACTAGCACACATGCCTTAATCCCAAACAACAATGGCATGTACAAATCATGGTTGCAAAAAACTCAGTTTTCTGATGCATCAAAACAACCTTCAGCTGAGGCAAATGGGTGTATCTTTCAGTCTTTGAATTTGACTATGAGCCCCATTATTCAAAATAAGGTGGGTGCTATTTCACCTTTGCAAGTTAATGATGATAGTCGAAAACGTTCCATAGTCAAAGCTCAAGCTAGGGAACCTGTGCCTCGCAAATCTATTGATACATTTGGTCAGAGAACTTCCCAATACCGTGGTGTTACAAGGCATAGATGGACTGGTAGATATGAGGCCCATTTGTGGGATAATAGCTGCAGAAAAGAAGGGCAAACAAGGAAAGGAAGACAAGGTGGTTATGACAAGGAAGAAAAAGCAGCAAGGGCTTATGACTTAGCTGCAATCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTTTAAGCACTTATGCGAAGGAACATGAAGAGATGAAGCACATGAGCAGGCAAGAATTTGTAGCAAATTTAAGAAGGAAGAGCAGTGGATTTTCAAGAGGGGCCTCTGTCTATAGAGGAGTAACAAGACACCATCAACATGGAAGGTGGCAGGCTCGAATCGGAAGAGTTGCCGGAAACAAGGACTTGTATCTTGGTACATTCAGCACACAAGAAGAAGCTGCTGAAGCATATGATATAGCAGCAATCAAGTTCAGGGGAACAACTGCTGTGACCAACTTTGACATTAGTAGGTATGATGTGAAGAGAATTTGCTCAAGCTCAACTCTAATTGCGGGCGACCTTGCGAAACGGTCTCCTAAAGACTCAGCTCTCGCCGCGGCTGCGGCTGACTCCGAGGACTTCAGTTCGTTGACACCTTCTCAGCCAACTCCTTCGGCTATAACCGATGGCAAACGCTCCGAGGAATTGTCAAACATTGTGTTGAATGCCAACTGTGATGAGCAGGCAGTGACCGAGAGTGGAAATACCAACAATGTCTCTGAATCATCATCACAAGAGTTTTCAACAAGTAACAAGGATGTGTTGAACCCTCAAAGCCCCAAGTGTTCTGTGGGACTGCCCAATGAGTTTGGGGTGAGTGGAGCAGATTATGGACATGGGAACTTCACCCTGCAAGGACCAAAATATGATGATGACGATAACGATAATGGAAACAATGAAAATTTGGGTTTGGTTAATCAAGTTCCTATGTTTACTTTGTGGAATGAATGA 1722 0.4199 MNNWLGFTLSPHLRLNEDFERENQDHGSHHLHPHHLSVMPLHSDGSLCVTDSFGHHSDPPEEWRYDNAIGGGNSSEEGPKLEDFLGCYSNSSIAETKVFCQQDTTQQHDQNQNQNISKINVNMAPSFSTNNNTEIETVKNNNLTNQSSMIQSFHAYNDSSTSTHALIPNNNGMYKSWLQKTQFSDASKQPSAEANGCIFQSLNLTMSPIIQNKVGAISPLQVNDDSRKRSIVKAQAREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQGGYDKEEKAARAYDLAAIKYWGPTTHINFPLSTYAKEHEEMKHMSRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTTAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKDSALAAAAADSEDFSSLTPSQPTPSAITDGKRSEELSNIVLNANCDEQAVTESGNTNNVSESSSQEFSTSNKDVLNPQSPKCSVGLPNEFGVSGADYGHGNFTLQGPKYDDDDNDNGNNENLGLVNQVPMFTLWNE 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1029 573 Gene3D AP2/ERF domain 253 319 IPR036955 GO:0003700|GO:0006355
Lal20g1029 573 Gene3D AP2/ERF domain 353 413 IPR036955 GO:0003700|GO:0006355
Lal20g1029 573 SMART rav1_2 353 417 IPR001471 GO:0003700|GO:0006355
Lal20g1029 573 SMART rav1_2 254 323 IPR001471 GO:0003700|GO:0006355
Lal20g1029 573 CDD AP2 352 413 IPR001471 GO:0003700|GO:0006355
Lal20g1029 573 ProSiteProfiles AP2/ERF domain profile. 254 317 IPR001471 GO:0003700|GO:0006355
Lal20g1029 573 Pfam AP2 domain 352 403 IPR001471 GO:0003700|GO:0006355
Lal20g1029 573 Pfam AP2 domain 254 309 IPR001471 GO:0003700|GO:0006355
Lal20g1029 573 MobiDBLite consensus disorder prediction 488 520 - -
Lal20g1029 573 MobiDBLite consensus disorder prediction 540 560 - -
Lal20g1029 573 CDD AP2 253 319 IPR001471 GO:0003700|GO:0006355
Lal20g1029 573 SUPERFAMILY DNA-binding domain 352 413 IPR016177 GO:0003677
Lal20g1029 573 ProSiteProfiles AP2/ERF domain profile. 353 411 IPR001471 GO:0003700|GO:0006355
Lal20g1029 573 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 29 506 - -
Lal20g1029 573 SUPERFAMILY DNA-binding domain 253 319 IPR016177 GO:0003677
Lal20g1029 573 MobiDBLite consensus disorder prediction 444 468 - -
Lal20g1029 573 MobiDBLite consensus disorder prediction 488 524 - -
Lal20g1029 573 MobiDBLite consensus disorder prediction 450 468 - -
Lal20g1029 573 PRINTS Ethylene responsive element binding protein signature 255 266 IPR001471 GO:0003700|GO:0006355
Lal20g1029 573 PRINTS Ethylene responsive element binding protein signature 393 413 IPR001471 GO:0003700|GO:0006355
Lal20g1029 573 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 29 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1029 Lal-Chr20 13670168 13674989 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1029 1 440 AP2-EREBP Transcription Factor Family AT1G72570 50.533 3.42e-135 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lal20g1029 AP2 2.1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1029 K09285 - gmx:100809762 798.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1029 20 13670168 13674989 Lal20g1029 20 13670168 13674989 ECH
Lal20g1029 20 13670168 13674989 Lal1g1384 1 15882416 15887246 LSH
Lal20g1029 20 13670168 13674989 Lal18g0120 18 958901 962581 LSH