Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1025 ATGGTCAGACCCTATGGCAAGTCTGCTGCCATGCCATCTATACCAAGTTCTTCTGGTTTTCATGAACCAATTATCGGTGCAATCACAGTTTATGAGATTCTAAGACTTTTGCCTAAGTGTCATCATGCTTTTCATTTACCTTGTATTGATACTTGGCTTGCATCTCATACCAATTGTCCTATGTGTAGAGCTCCAATTGTTACCAACCCTACAAGGATTCCATCTCTTATGCCTAATAATGCTGTTGTTGATACTTCATTGGAAAATAGTGCTCCTCATACCCCTCAAGGACTTGAACTTAGGAATGGTTCAGAAGAAGAAGGAGAATTGGAAGTTCAAGATGAGACAAGGGTATGTGAAATTGAAAGTGTTGTGGTGAATATAAGACCAAGAAGATCTGTTTCTTTGGATTCATCTTCTGTTGCAAATGTCAATCTTGTTCTTGCAAATGTTCAATCATCAGTTCAAAGTGGTGAAAATGAAGGAATTGTTTCAAAGAGGTTTATTGCTGGAAATGAGAATTTTCCAACTACGTCCAATTCCAAAAGAAGCTCATCTTTCAGGACAAGATATCTGCATAGTGTGCTTTTTTTTTACTAG 600 0.3767 MVRPYGKSAAMPSIPSSSGFHEPIIGAITVYEILRLLPKCHHAFHLPCIDTWLASHTNCPMCRAPIVTNPTRIPSLMPNNAVVDTSLENSAPHTPQGLELRNGSEEEGELEVQDETRVCEIESVVVNIRPRRSVSLDSSSVANVNLVLANVQSSVQSGENEGIVSKRFIAGNENFPTTSNSKRSSSFRTRYLHSVLFFY 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1025 199 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 68 IPR013083 -
Lal20g1025 199 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 32 183 - -
Lal20g1025 199 SUPERFAMILY RING/U-box 30 72 - -
Lal20g1025 199 ProSiteProfiles Zinc finger RING-type profile. 40 63 IPR001841 -
Lal20g1025 199 Pfam RING-H2 zinc finger domain 38 63 IPR024766 GO:0008270
Lal20g1025 199 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 32 183 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1025 Lal-Chr20 13579464 13582295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1025 19 199 C3H Transcription Factor Family AT5G17600 33.610 2.23e-22 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1025 - - lja:Lj6g3v2193690.1 127.102