Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0990 ATGACCATGGAACCACACCAAACATCAGATCATATTATTGACTGGCTTGAAGGTTCTATCTCTTACTTTCCATCATTCTTGGATGATTCTTACAATTCCGGAGAAATCCAACAGTATCAATTGTGGGATCAAGACATAAGCCAGTACCATAATAATACCAACATAGATTCTCTCAATGCCATCAACCCAAACACCAATACTATTGCAGCTGCTACAAGTACCACCACTAGCACAACACCTCCTGAGCCTTATGACTCAAGCAACATACCACTTTCTGATTTGGCCAAGAAAAAAAATGCCACTGATGTCATAAGTCTCAAACCATCACAAAACCAAAAATACAAGAAGATCAAGAGTCGCCCGACGAATAAACCCGAGAATGGAGACAAAGTTATTAAAGGGACAACAACTGTGACTAGAAAATCTGGTGGGAAAAAGAAAGGTTCAGCGAAATCAAATGCTAATAACTTAAACAATAGAAACAACAAGGAAGGTAGGTGGGCAGAACAATTGCTCAATCCTTGTGCTGTTGCTATATCTGGAGGAAACCTGAACCGTGTGCAACATCTCTTGTATGTTCTACATGAGCTAGCCTCAGCTACAGGTGATGCAAATCACCGGCTTGCAGCACATGGTCTTAAAGCACTGACACACCATTTATCATCATCGTCGTCGTCATCATCATCTGCTACCTCTTCAGGGGTTATAACCTTTGCATCTTCCGAGTCGCGTTTCTTTCAAAAGTCACTACTAAAGTTCTATGAGGTTAGCCCCTGGTTTTCCTTTCCTAATAACATAGCAAATGCTTCCATCCTTCAAGTTCTTGCCGAAGCACCGAATAGTATGCGTACCCTTCACATCCTTGACATTGGGGTCTCTCATGGTATGCAATGGCCAATATTTCTAGAGGCCTTGAGTCGCAGACCCGGTGGACCTCCTCCCCTGGTTCGCCTCACCGTTGTTACTGCTGAAAATGAACAAAACAAGGAGACTCCATTTTCGGTAGGTCCACCGGGCGATAACTTCTCTTCTAGACTCCTTGGTTTTGCCAAGTCCATGAACATCAATTTGCAGATAAAGAAGCTTGATAATCATCCATTGCAGAGCTTAAATGCTAAAATTATTGATACCTCCCCGGACGAAGCTTTTATTGTCTGTGCACAGTTTAGGCTGCACCATTTGAATCATAATGCTACTAATGAAAGGAATGAGTTTCTGAAGGTGCTGAGAAACATGGAGCCACAAGGGGTGATAATAAGTGAGAACAACATGGAATGTTGCTGCAATAGTTGTGGGAATTTCGCGGATGGTTTCTGTAGAAGAGTGGAGTACTTATGGAGGTTTTTCGATTCGACTAGCTCAGCATTCAAGGGTCGAGAGTGTGATGAAAGAAGCGTGATGGAAGGCGAGGCAGCAAAAATATTGACAAACCAGCGCGAGATGAATGAAGGGAAAGAAAAATGGTTCGAAAGAATGAGAGAAGCAGGGTTTGTATGGCAAATGTTTGGAGAGGATGCCATAGATGGAGGACAAGCTTTGTTGAGGAAATATGATAGTAATTGGGAAACGAAAGTCGAAGAAAACAACGCGAGTGTGGAACTATGGTGGAAGGGGCAGCCTGTTTCTTTCTGTTCATTGTGGAAGTTGGATGGGAACTACAAGAGTAGATTCCGTGACCGGCTTTAG 1686 0.4288 MTMEPHQTSDHIIDWLEGSISYFPSFLDDSYNSGEIQQYQLWDQDISQYHNNTNIDSLNAINPNTNTIAAATSTTTSTTPPEPYDSSNIPLSDLAKKKNATDVISLKPSQNQKYKKIKSRPTNKPENGDKVIKGTTTVTRKSGGKKKGSAKSNANNLNNRNNKEGRWAEQLLNPCAVAISGGNLNRVQHLLYVLHELASATGDANHRLAAHGLKALTHHLSSSSSSSSSATSSGVITFASSESRFFQKSLLKFYEVSPWFSFPNNIANASILQVLAEAPNSMRTLHILDIGVSHGMQWPIFLEALSRRPGGPPPLVRLTVVTAENEQNKETPFSVGPPGDNFSSRLLGFAKSMNINLQIKKLDNHPLQSLNAKIIDTSPDEAFIVCAQFRLHHLNHNATNERNEFLKVLRNMEPQGVIISENNMECCCNSCGNFADGFCRRVEYLWRFFDSTSSAFKGRECDERSVMEGEAAKILTNQREMNEGKEKWFERMREAGFVWQMFGEDAIDGGQALLRKYDSNWETKVEENNASVELWWKGQPVSFCSLWKLDGNYKSRFRDRL 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0990 561 Pfam GRAS domain family 169 548 IPR005202 -
Lal20g0990 561 MobiDBLite consensus disorder prediction 73 93 - -
Lal20g0990 561 MobiDBLite consensus disorder prediction 110 162 - -
Lal20g0990 561 MobiDBLite consensus disorder prediction 129 162 - -
Lal20g0990 561 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 4 548 IPR005202 -
Lal20g0990 561 ProSiteProfiles GRAS family profile. 159 548 IPR005202 -
Lal20g0990 561 PANTHER NODULATION-SIGNALING PATHWAY 1 PROTEIN-LIKE 4 548 IPR030015 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0990 Lal-Chr20 13049240 13050925 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0990 2 548 GRAS Transcription Factor Family AT3G13840 49.727 1.03e-172 497
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lal20g0990 GRAS 1.5e-76 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0990 - - gmx:100806550 749.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0990 20 13049240 13050925 Lal20g0990 20 13049240 13050925 ECH
Lal20g0990 20 13049240 13050925 Lal8g0303 8 2035943 2037169 PCT