Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0966 ATGAGCAAAAATACTACCACTTCGGATCCCAAGTTTTCTGCGTTTCAAAAAGAAAACCCGGGACGTATCGCCCAAATAATTGGTCCGGTACTGGATGTATCTTTTCCCTCGAGGAAGATGCCGAATATTTACAACGCTCTGATAGTTAAGGGACAAGATACTATTGGTCAACAAATTAACATTACTTGTGAAGTACAGCAATTATTAGGAAATAATCGAATCAGAGCTGTAGCTATGAGTGCTACAGATGGTCTAATGAGAGGAATGGAAGTGATTGACACAAGGGCTCCTCTAAGTGTTCCAGTCGGCGGAGCAACTCTAGGACGCATTTTCAACGTGCTTGGAGAGCCTATTGACAATTTAGGTCCTGTAGATACTCGCACAACATCTCCTATTCATCGATCTGCACCTGCCTTTATACAATTAGATACAAAATTATCCATTTTTGAAACAGGGATTAAAGTAGTCGATCTTTTAGCTCCCTATCGCCGTGGAGGAAAAACAGTACTCATTATGGAATTGATCAATAACATTGCCAAAGCTCATGGGGGTGTATCTGTTTTTGGCGGAGTAGGTGAACGTACTCGTGAGGGAAATGATCTTTACATGGAAATGAAAGAATCTGGAGTAATTAATGAACAAAATATTGCAGAATCAAAAGTGACTCTAGTTTACGGTCAAATGAATGAACCGCTTGGAGCTCGTATGAGAGTTGGGTTAACTGCCCTAACTATGGCGGAATATTTCCGGGATGTCAATGAACAAGACGTACTTCTATTTATCGACGATATCTTCTGTTTCGTTCAAGCAGGATCCGAAGTATCTGCTTTATTGGGTAGAATGCCTTATGCTGTGGGTTATCAACCCACCCTTAGTACCGAAATGGGTTCTTTACAAGAAAGAATTACTTCTACCAAAGAAGGGTCCATAACTTCTATTCAAGCAGTTTATGTACCTGCGGACGATTTGACCGATCCTGCTCCTGCCACGACATTTGCACATCTCGATGCCACTACCGTACTATCAAGAGGATTAGCTGCCAAAGGTATCTATCCAGCAGTAGATCCTTTAGATTCAACGTCAAGTATGCTCCAACCTAGGATCGTTGGCGAAGAACATTATGAAACTGCCGAAAGAGTTAAACAAACCTTACAGCGTTACAAAGAACTTCAGGACATTATAGTTATCCTTGGGTTGGACGAATTATCCGAAGAGGATCGCTTAACCGTAGCAAGAGCACGAAAAATTGAGCGTTTCTTATCACAGCCCTTTTTTGTAGCATAA 1284 0.4136 MSKNTTTSDPKFSAFQKENPGRIAQIIGPVLDVSFPSRKMPNIYNALIVKGQDTIGQQINITCEVQQLLGNNRIRAVAMSATDGLMRGMEVIDTRAPLSVPVGGATLGRIFNVLGEPIDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVTLVYGQMNEPLGARMRVGLTALTMAEYFRDVNEQDVLLFIDDIFCFVQAGSEVSALLGRMPYAVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSSMLQPRIVGEEHYETAERVKQTLQRYKELQDIIVILGLDELSEEDRLTVARARKIERFLSQPFFVA 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0966 427 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 152 361 IPR000194 GO:0005524
Lal20g0966 427 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 364 427 - -
Lal20g0966 427 Gene3D - 98 363 IPR027417 -
Lal20g0966 427 PANTHER ATP SYNTHASE 1 427 - -
Lal20g0966 427 Gene3D - 18 97 - -
Lal20g0966 427 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 20 97 IPR036121 GO:0046034|GO:1902600
Lal20g0966 427 Gene3D - 364 427 IPR024034 -
Lal20g0966 427 PANTHER F0F1-TYPE ATP SYNTHASE, BETA SUBUNIT 1 427 - -
Lal20g0966 427 Pfam ATP synthase alpha/beta family, beta-barrel domain 23 94 IPR004100 GO:0046034|GO:1902600
Lal20g0966 427 Hamap ATP synthase subunit beta [atpB]. 18 427 IPR005722 GO:0015986|GO:0045261|GO:0046933
Lal20g0966 427 TIGRFAM atpD: ATP synthase F1, beta subunit 21 427 IPR005722 GO:0015986|GO:0045261|GO:0046933
Lal20g0966 427 ProSitePatterns ATP synthase alpha and beta subunits signature. 352 361 IPR020003 GO:0005524
Lal20g0966 427 CDD F1-ATPase_beta 97 366 - -
Lal20g0966 427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 366 IPR027417 -
Lal20g0966 427 CDD ATP-synt_F1_beta_N 19 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0966 Lal-Chr20 12530696 12531979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0966 98 422 Primary Pumps ATPases(2) AT4G38510 26.703 6.73e-23 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0966 K02112 - mnt:24286633 766.533