Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0964 ATGAAGACGCTAAATAGCTTATTTGGTGCAAGACGCAGAAGGGTTCATGGGGTTTTCAATGGCCTTTGTGCTATGCTTGTGTTTTTCTACTTTTACAATCGTGAAGATATTATTCGAAACCCTCTTCTTAAGCAATCCACATATTTGGGGAATAATCAAAATTCAATTTTGAGAAATGGGCATTCTCACATTGCTATGATTCAACGTAGAATGATTGAAACAGATCTCAGTACTTCAAGGGTAGTTGGTGAGCCTCGTGACGAAGATTTAGCTCTAGGTAGTAGTCCTGGATTGTGTGCTGGATTGCTCCACCATGATGGTTATGCTAGCCGATGTGAATTCTTAAAGGTTAATCCGCAATGCTCTTCCGAGGGATATATTGATTACTTGAGGTTTTTTTATTGTAAATGTCAAAGTTTTCGATTACTTGGTTATCTAGTATTTGCTCTGTGGCTTGCTGCTTTGTTTTATCTATTGGGGAACACTGCGGCAGACTACTTTTGCCCATCTCTTGAGCATCTCTCAAGGCTCTTGAAGTTGCCTCCAACTGTGGCTGGGGTTGTGCTGCTCCCACTCGGAAATGGAGCGCCCGATGTGTTTTCCAGTATAGCTGCTTTTGTGGGTACTGAAACAGGTGAAGTGGGTCTTAACAGTGTGTTAGGTGGTGCTCTTTTTGTTACCTGTATTGTTGTTGGAGCTGTTTCTCTATGTGTTGCGGATAAGGAGATTCGAATTGATCGAAGATGCTTTATAAGGGATGTCAGTTTCTTTATATTCACTCTTGTTTCACTTTTAGTTATTTTGGTTGTTGGTAAGGTGGGTGTTGGGGCAGCCATTGCTTTTGTATCAATTTATGTTGTTTATGCATTCATTGTTGCTGCCAATGAGATATTGCGGAAACATGCACATAGGTTGAAATGGGATGCTGTCACCCCATTGCTTCCTGTCCAGGGAAGTGTGTTCTCTCAAGGTTCCGAAGAGGATAATTTTATCTATAGCTCTTTGCTTCACTTAGACACCGAGAGTGATCCTCCCCGTCTCCCTTCTTCCTTGCCCCAATGGATGTGGTCTTCAAATGTAGCTATATATTCAAACCAGGGAAATAAAATCACATTGGATGAAAGGCCTCCTTGGGGATGGAGTGACGAGAGCATGGAAAGCGGCAGGTTGTCCTTCTCGGTTTCAAAACTTTTTTTATTGATGGAACTGCCACTGTCAATTCCTAGACGGCTAACAATTCCGATGGTCAATGAGGAAATATGGTCAAAGCCATATGCTGTAGCCAGTGCTTCATTGGCTCCAATTCTCATGGCCTTTTTATGTGGCACCCAAGATAATATGAGTTATCAGAGTACTATTCTTTCTTATTGTATTGGTGTTACTACTGGATGTACACTTGGTATTCTAGCGTATAAATACACTGTGGCTGATCATCCACCACGCCGGTTTTTGATTCCCTGGGTTCTTGGAGGATTCATCATGAGCATAGTGTGGTTTTACATGATAGCAAATGAGCTTGTGGCACTATTATTATCATTTGGTGTAATTTTCGGTATTAATCCATCCATCCTTGGATTAACTGTATTAGCATGGGGAAATTCAATGGGAGATTTGATGTCAAATATTGCATTGACATTGGATGGAGAAGATGGGCTTCAGATTGCTTTATCCGGGTGCTATGCCGGTCCTATGTTCAACACACTTGGTGGTTTGGGGATCTCATTGCTGCTTGGGGCCTGGTCAAAGAAACCTGCTTCGTACGTCGTGCCGAAAGACAGTAGCTTGTTTTACACCATGGGATTTCTTATCACAGCACTGCTATGGGCACTTATTGTTTTACCACACAACAATATGCATCCTAGCAGAATATTAGGATTGGGTCTTGTTGCCCTTTATTTGATATTTCTTTCTTTCAGGGTGTGCACTGCTATGGGGCTCGTAACAGTTGCTGGTTTAAGTTGA 1962 0.4195 MKTLNSLFGARRRRVHGVFNGLCAMLVFFYFYNREDIIRNPLLKQSTYLGNNQNSILRNGHSHIAMIQRRMIETDLSTSRVVGEPRDEDLALGSSPGLCAGLLHHDGYASRCEFLKVNPQCSSEGYIDYLRFFYCKCQSFRLLGYLVFALWLAALFYLLGNTAADYFCPSLEHLSRLLKLPPTVAGVVLLPLGNGAPDVFSSIAAFVGTETGEVGLNSVLGGALFVTCIVVGAVSLCVADKEIRIDRRCFIRDVSFFIFTLVSLLVILVVGKVGVGAAIAFVSIYVVYAFIVAANEILRKHAHRLKWDAVTPLLPVQGSVFSQGSEEDNFIYSSLLHLDTESDPPRLPSSLPQWMWSSNVAIYSNQGNKITLDERPPWGWSDESMESGRLSFSVSKLFLLMELPLSIPRRLTIPMVNEEIWSKPYAVASASLAPILMAFLCGTQDNMSYQSTILSYCIGVTTGCTLGILAYKYTVADHPPRRFLIPWVLGGFIMSIVWFYMIANELVALLLSFGVIFGINPSILGLTVLAWGNSMGDLMSNIALTLDGEDGLQIALSGCYAGPMFNTLGGLGISLLLGAWSKKPASYVVPKDSSLFYTMGFLITALLWALIVLPHNNMHPSRILGLGLVALYLIFLSFRVCTAMGLVTVAGLS 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0964 653 Pfam Sodium/calcium exchanger protein 149 292 IPR004837 GO:0016021|GO:0055085
Lal20g0964 653 Pfam Sodium/calcium exchanger protein 488 639 IPR004837 GO:0016021|GO:0055085
Lal20g0964 653 Gene3D - 426 641 IPR044880 -
Lal20g0964 653 Gene3D - 180 312 IPR044880 -
Lal20g0964 653 PANTHER CATION/CALCIUM EXCHANGER 4 10 649 - -
Lal20g0964 653 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 10 649 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0964 Lal-Chr20 12519770 12521731 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0964 88 647 Antiporters AT5G17860 40.497 5.52e-130 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0964 K13754 - gmx:100796101 1014.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0964 20 12519770 12521731 Lal20g0964 20 12519770 12521731 ECH
Lal20g0964 20 12519770 12521731 Lal1g1406 1 16050387 16052345 LSH