Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0962 ATGGTGAAGGAAACAGAGTATTACGATATTCTCGGTGTAATTCCTTCTGCCTCTGACGACCAAATTCGCAAGGCTTATTATCACAAGGCAATGCAAGTTCATCCTGATAAAAATCCAAATGATTCTCTTGCTGCTGAAAAGTTTCAGATTCTGGGAGAAGCATACCAAGTGTTGAGTGATCCGGTGCAGAGGAATGTGTATAATCAAAATGGGAAGCATTCTGTATCTAGAGAAACTATGCTTGATCCCACCACTGTCTTTGCTCTGCTCTTTGGAAGTGAATTGTTTGAGGACTACATAGGTCATCTAGCTGTGGCATCAATGGTTTCTTCTGAGCTAGCTGATGAAAATGAGGATCCTGATAACATGCAAGAAAAGTTAAAGACTGTCCAAAAAGAAAGGGAAGAAAAACTAGCAAGGTTTTTAAAAGATTTTCTTGGCCAATATGTCCATGGTGATAAAAAGGGATTCATCCACCTCGCAGAATGTGAGGCAAGGAGGCTTTCTCAAGCTGCCTTTGGAGTTGACATGTTACACACCATCGGTTATGTATATTCAAGACAAGCAGCACAAGAACTTGGGAAAAAAGCCATTTACCTTGGAGTCCCATTTCTTGCTGAATGGGTTCGCAATAAAGGACATTCCTGGAAATCACAGTTCACAGCTGCAAAAGGTGCTTTTGAGTTGCTTCAGCTTCAAGAAGACATCCACAAGCAATTTAAAATGGATGGTAGTGGCCCAGAAAATGACATAGAATCCCATATTCGCCGTAATAAGGATTCATTGACGAATTCTTTGTGGAAGTTAAATGTAGTGGACATTGAAGTAACCCTTGTGCATGTGTGCCAAATGGTGCTAAGAGAAAATAACATTAAGAAGGAGGAACTTAAAGTTCGGGCTCAAGCTCTAAAAGCTCTTGGGAAGATATTCCAGGACAAGAATTCAAAAGGAAGAGAAACATTGAAAAAGAAAATAGATGCTGCCTACGATGACGAAGGAAACAGTTCTGATTCTTCAGATGATGAATCACCAAGAGCACTTTCCTATCGAACTCCCTTTTTCTCTCAGGCATGTATTCTATTTAAGGACACACAGGCTATTGGTACACTCTTCAAATGCCTCTGTAATCCAGCATTTGATGTAGACGAGGAAGAGATAGTTTATAAAAGCAAATGA 1176 0.4005 MVKETEYYDILGVIPSASDDQIRKAYYHKAMQVHPDKNPNDSLAAEKFQILGEAYQVLSDPVQRNVYNQNGKHSVSRETMLDPTTVFALLFGSELFEDYIGHLAVASMVSSELADENEDPDNMQEKLKTVQKEREEKLARFLKDFLGQYVHGDKKGFIHLAECEARRLSQAAFGVDMLHTIGYVYSRQAAQELGKKAIYLGVPFLAEWVRNKGHSWKSQFTAAKGAFELLQLQEDIHKQFKMDGSGPENDIESHIRRNKDSLTNSLWKLNVVDIEVTLVHVCQMVLRENNIKKEELKVRAQALKALGKIFQDKNSKGRETLKKKIDAAYDDEGNSSDSSDDESPRALSYRTPFFSQACILFKDTQAIGTLFKCLCNPAFDVDEEEIVYKSK 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0962 391 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 366 - -
Lal20g0962 391 Gene3D DnaJ domain 1 86 IPR036869 -
Lal20g0962 391 CDD DnaJ 6 60 IPR001623 -
Lal20g0962 391 Pfam DnaJ domain 6 68 IPR001623 -
Lal20g0962 391 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
Lal20g0962 391 PRINTS DnaJ domain signature 8 26 IPR001623 -
Lal20g0962 391 PRINTS DnaJ domain signature 26 41 IPR001623 -
Lal20g0962 391 PRINTS DnaJ domain signature 43 63 IPR001623 -
Lal20g0962 391 SUPERFAMILY Chaperone J-domain 2 101 IPR036869 -
Lal20g0962 391 SMART dnaj_3 5 63 IPR001623 -
Lal20g0962 391 ProSiteProfiles dnaJ domain profile. 6 71 IPR001623 -
Lal20g0962 391 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 366 - -
Lal20g0962 391 Pfam X-domain of DnaJ-containing 131 320 IPR026894 -
Lal20g0962 391 Coils Coil 286 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0962 Lal-Chr20 12500319 12511795 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0962 7 68 C2H2 Transcription Factor Family AT1G74250 40.299 3.87e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0962 - - gmx:100793811 633.639