Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0889 ATGTCTTCCAACGTTAAGCAACATGAAAAAGAGCCTCACATCTTAAAACAACAAGAAAACAAAGAAGAAGAAGAAGATGAATATGAAGAAGAAGGGTGGGATGATTGGGAAGGAGACGAAGGAGAGTCGCAATCAGAACTTGTCTGTCTCTTTTGTGATTCCAAGTTCGGTTCTTGCGACTCGTTGTTCGTACATTGTGGTTCAGTTCATCACTTCGATTTTCATGGTCTTAGGAAATCTCTCTGCCTCAATTTCTATGCCTCCTTTAAGCTAATTAACTACATTCGCTCTCAGGTGGCAGAGAGACGATGTTGGAGCTGTGGATTAACATGTCCGTCAAACCAAGACTTGCAGAATCATTTGCATGATGTAATCAGCTTCAACGATATTAAGACTCTGTGGGATCATGATAGGTATCTAAAACCTTTCGTACAAGATGATCCGCTGTTGTACAGTTTTGATGAACATGAAGAAGGTGAAGATGAGCAAATTACTGCAATTGATGACGATCTGATGAGGGATTTGAAGAACTCTGCTGAGGCTTTCAGTGACAACCAAAATGCTGTGAAAGAAGTTGTAGTTAATAATGGTCTATATGATGCTCCAATAACAGAAGGGTCTGCTTCTATTTCTGATCATCATTTGAGTTTTGCTAGTTCATCAGACAAGGAACATATTGACGGTAAGGACTCAAGAGGATTTGTTTCATCAATTGATAAGGATCCAGAAAGGCACTTAACGGCTCATTCTCAAAATCACATTGCAAAGCATATTAAGAAGGCTAATGAAAGTTATTTTGGGTCTTACAGTTCATTTGGCATCCATCGAGAGATGCTAAGTGATAAGGTGAGAATGGATGCTTACGGCCAAGCAATTTTGAAGAACCCCTCTCTCCTAAATGGTGCTGTGGTTATGGATGTTGGTTGTGGAACTGGCATCCTCAGGGTTTCGGTTGTTCACCGCTACGCCACAGTGGATAGCGGTGAAAATGGACATAGCGTCTGTAGCAGCAGGTCAAATAGCTGTAGAATCGCTGATCAAATAGCAGCACAAGGAGGAGCTTCAAGGGTGATTGCTGTTGAGGCCAGTTCCAAGATGGCGGCAGTGGCATCTCAGGTCGCAAAAGATAATGTTCTCTGGCTGAGTAAAAGCAAAAGTGGACATAGTGGCCTCCAAAAGGGAGTGATAGAAGTAGTTAACAGTATGGTTGAAGAGATTGATAAAAATGTTGAACTTCAACCTCACAGTGTTGATGTATTGTTAAGTGAATGGATGGGATATTGCCTGCTGTATGAATCCATGCTTGGTTCAGTGCTTTATGCACGAGACCGGTGGTTGAAGCCTGGAGGTGCCATTCTTCCTGATACAGCAACTATTTTTGTTGCAGGCTTTGGAAAAGGCGGCACAAGCCTTCCGTTTTGGCAAAATGTGTGTGATTTTGACATGTCTTGCATAGGGAAGGAGCTTGTCAAAGAGGCTGCCCAAATTCCTATAGTCGATGTTGTGGACTATCAAGATTTAGTTACTGGTTCTGAAGTTCTTAAGACCTTTGACTTGGCAACCATGAAGCCTAATGAAGTGGATTTCACTGCAACTGCTACTTTAGAACCAAAATCAAGTGCTTCAGAACACCGAAAAGTACATTTGGATTCCAAATCATGCTACTGCTGGTGTTATGGAGTTGTCCTGTGGTTTGATACTGGATTTACAAACAGATTCTGCCAGCAAACACCAGCTGTGTTATCCACATCCCCGTACACACCTAGAACACATTGGTCACAAACAATATTAACATTCCGGGAACCGATTGCCATCGGATTTGGAAAAGAAAATGAAGTTGACCAGACAAAAATAGGTACTGACATCTGTCCTGCCATGAAGGTTAATTTGCGTGTCAGCATTGCCCGATCTACAGAGCATCGCTGCATTGACATTTCGTTGGAAGCTGTAGGTGTTGATTCTGGTGGTCGGAAACGCAGTTTCCCTGCACAACTTTTTTCTTTACAGTAA 2010 0.4219 MSSNVKQHEKEPHILKQQENKEEEEDEYEEEGWDDWEGDEGESQSELVCLFCDSKFGSCDSLFVHCGSVHHFDFHGLRKSLCLNFYASFKLINYIRSQVAERRCWSCGLTCPSNQDLQNHLHDVISFNDIKTLWDHDRYLKPFVQDDPLLYSFDEHEEGEDEQITAIDDDLMRDLKNSAEAFSDNQNAVKEVVVNNGLYDAPITEGSASISDHHLSFASSSDKEHIDGKDSRGFVSSIDKDPERHLTAHSQNHIAKHIKKANESYFGSYSSFGIHREMLSDKVRMDAYGQAILKNPSLLNGAVVMDVGCGTGILRVSVVHRYATVDSGENGHSVCSSRSNSCRIADQIAAQGGASRVIAVEASSKMAAVASQVAKDNVLWLSKSKSGHSGLQKGVIEVVNSMVEEIDKNVELQPHSVDVLLSEWMGYCLLYESMLGSVLYARDRWLKPGGAILPDTATIFVAGFGKGGTSLPFWQNVCDFDMSCIGKELVKEAAQIPIVDVVDYQDLVTGSEVLKTFDLATMKPNEVDFTATATLEPKSSASEHRKVHLDSKSCYCWCYGVVLWFDTGFTNRFCQQTPAVLSTSPYTPRTHWSQTILTFREPIAIGFGKENEVDQTKIGTDICPAMKVNLRVSIARSTEHRCIDISLEAVGVDSGGRKRSFPAQLFSLQ 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0889 669 MobiDBLite consensus disorder prediction 1 40 - -
Lal20g0889 669 SUPERFAMILY beta-beta-alpha zinc fingers 29 162 IPR036236 -
Lal20g0889 669 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 22 667 IPR025799 GO:0016274|GO:0018216
Lal20g0889 669 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 268 323 IPR029063 -
Lal20g0889 669 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 3-RELATED 22 667 - -
Lal20g0889 669 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 348 610 IPR029063 -
Lal20g0889 669 MobiDBLite consensus disorder prediction 1 21 - -
Lal20g0889 669 MobiDBLite consensus disorder prediction 22 40 - -
Lal20g0889 669 Gene3D Vaccinia Virus protein VP39 253 340 IPR029063 -
Lal20g0889 669 Gene3D Vaccinia Virus protein VP39 341 454 IPR029063 -
Lal20g0889 669 Pfam C2H2 type zinc-finger (2 copies) 49 123 IPR041661 -
Lal20g0889 669 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 262 627 IPR025799 GO:0016274|GO:0018216
Lal20g0889 669 Gene3D - 457 664 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0889 Lal-Chr20 11390084 11395945 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0889 22 668 C2H2 Transcription Factor Family AT3G12270 50.602 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0889 K11436 - gmx:100781879 867.84