Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0771 ATGACGACGTTGGTCAGTGTGGCTCTGCGAGCACGGCGCCAACCTCATGCAACTCCCGCTTGCAACAGGATTCTCTATGACAGTGGCACTATCTATAACAACTCGGCTGCGGCGTCTTCGGGATTTTCTTCGGTTATTTATGGTTGGCCACTTCAGATGGAAAACATGAAAAAGAGAAAATTTTCTGAATTGTTGTCAGAGCTGATTGTTTTGGCTGATGAGGTTGCTAGTTTTGCTAAGAACTCTGAAATTGAGGTAGGTATTTTTGCTGAGTTTGCCATGTTAGTTGAGAAATTCCGTCCAATCTTCGATGACTTGAGGGACAAAAGCACCGTCTTCAACAAGCCACCTATTAGAAAATCGTTGGAATCACTTGAGAATGAGCTAAGGCGTGCTAAAGCTTTGATAAGAAGCTCCAATTTGAGACAACCCGTGAAGCAAATTGAGGAAATAACTCATGATATTGGTCGATCGTTAGGTGTTCTTCTTGTAGCGAGCCTTGAAATGTCCACAGATTTTAGAGAAAAGATTGGTAAATTGCAAAGACAGTTGATGAATACAAGGTTTGCTGACAATTGGAGTCTAACTTCAAGTCCAAAATCAGAGTCTATTAGTAGTGATAAGAAGGTTAATTGGGAAATTGAAGAGGAAATAATTAATGTTACTATTGGTGATGTTGTTTTGCAACTTAAGAATGGTAATGATGAAGATTTTGCGGTTGCACTTTTGAAACTAAAGGAGTTCATTAGCAATGAGAATTACCGCGGTGGTTTAATTAATGAAGATGCAATTGTCGCCATTCTCTTCAATCGTCTCGTTTCATGTAAGGCAGACAACAGGCTGGCCATCATTCAATTGTTAAGAAGTATTTCTTTGTCAAACGATAAGAAAAAGCGAAAAAGTAGTACTGTGCAGGAGAAGATGGCAGATATCGAGTCTTTATCAACAGTGGTGAAGTCTTTGACACGGGATGCACAAGAGAGGAGAGAAGCAGTGGGGTTGTTGCTTGAACTCTCTGTCCTTTCTGAAGTTCGACGGCGGATCGGAAGAATTAAGGGTTGTATTGTTATGTTAGTTGCTATCCTTAATGCAGATGACCCCATTGCTTCACTTGATGCAGCAAAGTTATTGGAAATATTGTCTAGTAATACTCAAAATGCACTTCATATGGCAGAGGCTGGTTACTTTAGGCCATTAGTACAGTATTTGAAGGAAGGATCTGACATGAATAAGATCCTAATGGCAACAGCACTTTCTAGGTTAGAACTTACTGATCACAGCAAACTTGCCCTTGGAGAACATGGGGCAATTCAGCCCCTTGTTAAAATGTTTAATTCTGGCAAATTTGAGTCCAAGTTATCGGCTCTCAATGCACTGCAAAATCTGTCTAGCTTGACAGAAAATGTGCAACGCTTGATCAAATCTGGAATTGTACGGTCACTGCTGCAACTTCTTTTCTCTGTAACATCTGTGCTTATGACTCTTCGCGAGCCTGCATCAGCTATTCTTGCTAGAATTGCTCAGTCAGAATCTATTCTTATTAATCAAGATGTGGCTCAGCAGATGCTTTCACTTTTGAATCTTTCCAGCCCTATAATCCAAAGTCATCTACTAGAAGCACTAAATAGCATAGCTTCGCATCCTGGTGCGTCCAAATTGAGAAGAAAAATGAAGGAAAAAGGTGCACTTCATCTACTCTTACCCTTCCTAAAGGAAAATACCACTAAAATCCGGAGTAAGGTCTTGCATTTGCTCTACACTCTATCCAAAGATCTTACAAATGAACTGGCTGAACATCTTGATGAAGCTTATCTTTTGATAATTGTTAATATCGTCTCATCATCGACATTGGAGAGTGAAAAAGCTGCTGCTGTTGGCATACTAAGTAACCTTCCGGCTAATGATAAAAATGTGACAGATATAATGAAGACCGCAAATTTGTTGCCCATTTTGATATCCATTATGAATTCTAGCATAGGAAGTAACTCACCCACGACGACTAGCTTAGCAGAGAGTACTGCCGGTGTTATTATACGCTTCACAAATTCCTGTGACAAGAAATTACAGCTTTATTCAGCAGAACATGGTGTATTTCCATTGCTTGTGAAACTGCTCTCAAGTGGTTCACCAATGACAAAATCTAAAGCTGCTACTTCTCTTGCTCAACTATCAAAAAATTCTCTGACTCTTCGGAAGTCTAGAAAATCAAGGTGGTTGTGTGTACTGCCCTCAGTGGATGCATATTGTGGAGTTCACGGTGGCGACTGCTTTGTCAACAGCACATTTTGTCTAGTAAAGGCGGATGCTGTGCGTCCACTGGTCCGGATATTGGAAGATAAGGAGAGCGATGCAGCCGAAGCGGCTCTGAATGCCCTTTCAACTCTCTTACAAGATGAAATTTGGGAAGGTGGTGTCAATTCCATAGCTAACTTGTCAGGGGTACAGGCTATTATAAAGTGTCTTGAATTAGAGGATGCAAAGGTTCAAGAGAAAGCTATATGGATGCTGGAAAGAATATTCCAGGTCGAAGAGTGCAGAGTAAAATATGGAGAATCTGCTCAAGTGGTTCTTATTAATCTAGCCCAAAAGAGTGATTCTAGATTGAAGTCAACAGCAGCAAAAGTATTAGCAGAGCTGGAACTCTTGCTAGCTCAATCAAGCTACTTCTGA 2670 0.4064 MTTLVSVALRARRQPHATPACNRILYDSGTIYNNSAAASSGFSSVIYGWPLQMENMKKRKFSELLSELIVLADEVASFAKNSEIEVGIFAEFAMLVEKFRPIFDDLRDKSTVFNKPPIRKSLESLENELRRAKALIRSSNLRQPVKQIEEITHDIGRSLGVLLVASLEMSTDFREKIGKLQRQLMNTRFADNWSLTSSPKSESISSDKKVNWEIEEEIINVTIGDVVLQLKNGNDEDFAVALLKLKEFISNENYRGGLINEDAIVAILFNRLVSCKADNRLAIIQLLRSISLSNDKKKRKSSTVQEKMADIESLSTVVKSLTRDAQERREAVGLLLELSVLSEVRRRIGRIKGCIVMLVAILNADDPIASLDAAKLLEILSSNTQNALHMAEAGYFRPLVQYLKEGSDMNKILMATALSRLELTDHSKLALGEHGAIQPLVKMFNSGKFESKLSALNALQNLSSLTENVQRLIKSGIVRSLLQLLFSVTSVLMTLREPASAILARIAQSESILINQDVAQQMLSLLNLSSPIIQSHLLEALNSIASHPGASKLRRKMKEKGALHLLLPFLKENTTKIRSKVLHLLYTLSKDLTNELAEHLDEAYLLIIVNIVSSSTLESEKAAAVGILSNLPANDKNVTDIMKTANLLPILISIMNSSIGSNSPTTTSLAESTAGVIIRFTNSCDKKLQLYSAEHGVFPLLVKLLSSGSPMTKSKAATSLAQLSKNSLTLRKSRKSRWLCVLPSVDAYCGVHGGDCFVNSTFCLVKADAVRPLVRILEDKESDAAEAALNALSTLLQDEIWEGGVNSIANLSGVQAIIKCLELEDAKVQEKAIWMLERIFQVEECRVKYGESAQVVLINLAQKSDSRLKSTAAKVLAELELLLAQSSYF 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0771 889 Gene3D - 242 512 IPR011989 -
Lal20g0771 889 SMART arm_5 684 725 IPR000225 GO:0005515
Lal20g0771 889 SMART arm_5 465 508 IPR000225 GO:0005515
Lal20g0771 889 SMART arm_5 801 841 IPR000225 GO:0005515
Lal20g0771 889 SMART arm_5 550 590 IPR000225 GO:0005515
Lal20g0771 889 SMART arm_5 383 423 IPR000225 GO:0005515
Lal20g0771 889 SMART arm_5 757 797 IPR000225 GO:0005515
Lal20g0771 889 SMART arm_5 424 464 IPR000225 GO:0005515
Lal20g0771 889 SUPERFAMILY ARM repeat 218 492 IPR016024 -
Lal20g0771 889 Coils Coil 122 142 - -
Lal20g0771 889 SUPERFAMILY ARM repeat 433 844 IPR016024 -
Lal20g0771 889 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 53 889 - -
Lal20g0771 889 Gene3D - 754 885 IPR011989 -
Lal20g0771 889 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 435 477 IPR000225 GO:0005515
Lal20g0771 889 Pfam Armadillo/beta-catenin-like repeat 425 464 IPR000225 GO:0005515
Lal20g0771 889 Gene3D - 513 733 IPR011989 -
Lal20g0771 889 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN-LIKE 53 889 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0771 Lal-Chr20 8220579 8225198 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0771 195 889 U-box Gene Family AT1G20780 28.474 3.82e-40 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0771 K08332 - gmx:100791453 1203.73