Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0670 ATGGACGAATATTTTTGTGATGCTTACCCTGACCCTTACACTATTGACCTTGTCTCAGAAAACCCATCTTCTCCCAAAGATCAGTGCTTCAATGTAGAGATCAAATACACAGAAACCCATGTTCTAAATGCAAGAAAGTTTGAAACTTTTGAAGAATCCAAATATCACAGTTTCAAGAACATCTCAAAGGATGAAATGATGCAAGAAACAGTTATCTTAGGTTGCCTTTCTTCTATCAGTGTTCCTAAAGATGCTCACAAGATTATGGTTGCAAAGATCTTGGAATGTGCACGTGGAATGACTCTTCGGACTCACAAAGAAAATAGGGTTTTGTATATGCGTGTTGATATTACTATAACTCTAGCCACGAAAGACTGCGACGACATCGATAATGATAACGATGATAGTGATGACGATGATTATGATGATAATGATAATGACGAAGATGAAGAACTTGGGTTCGTGCCAGCGTCTAATTCATCAATTGAGGGATTGGAGACAATTAATGAAGAAGAAGGATGTGTGAATTGTGGAAAATGTGCTATTTGTTTTGAAGATATTGATGTTGTTAGTGTTGGTATGCCATGTTTGCATAAGTTTCATAAGAACTGCATTGTTGATTGGTTGAAGATTAGTGGTTTTTGCCCTTTGTGTCGGTTTCTCATGCCAACTGAGGAAGGTGAAAAAGATTGCTAG 696 0.3736 MDEYFCDAYPDPYTIDLVSENPSSPKDQCFNVEIKYTETHVLNARKFETFEESKYHSFKNISKDEMMQETVILGCLSSISVPKDAHKIMVAKILECARGMTLRTHKENRVLYMRVDITITLATKDCDDIDNDNDDSDDDDYDDNDNDEDEELGFVPASNSSIEGLETINEEEGCVNCGKCAICFEDIDVVSVGMPCLHKFHKNCIVDWLKISGFCPLCRFLMPTEEGEKDC 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0670 231 MobiDBLite consensus disorder prediction 130 152 - -
Lal20g0670 231 SMART ring_2 180 218 IPR001841 -
Lal20g0670 231 Pfam Regulator of volume decrease after cellular swelling 104 167 IPR039924 -
Lal20g0670 231 Pfam Ring finger domain 179 219 IPR001841 -
Lal20g0670 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 224 IPR013083 -
Lal20g0670 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 35 224 - -
Lal20g0670 231 SUPERFAMILY RING/U-box 179 224 - -
Lal20g0670 231 MobiDBLite consensus disorder prediction 130 155 - -
Lal20g0670 231 PANTHER F6A14.12 PROTEIN-RELATED 35 224 - -
Lal20g0670 231 ProSiteProfiles Zinc finger RING-type profile. 180 219 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0670 Lal-Chr20 6285927 6286622 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0670 151 224 C3H Transcription Factor Family AT3G14970 44.304 8.09e-13 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0670 - - lang:109344708 381.719