Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0669 ATGGCATTTCACGTAGCTTGTCCAATTACATGCCGCAGAATATGCTTCTGTCCGTTAGGGTTTCCTCGCTCTTCAAATAATGACCTCTTCAACGACGTCGTTTCCAGGCTCTCTGTTTTCCTTTCCGATCCCTCTGGAATTAGGGTTAATGGCGACCGTACTGTGCAGGTTGTTGTTCCTAAGGTTGTCCCACCGCCGCCGCCACCGCCGCAGGTTTTGCCTCCGTGTAGTATGGTGCCTGCCGCCGTTGGGGTTTCGGTTGCTGATTGTGATTTGGTGGTGGAGGAGGCTGCGTCGGCGCAGGCGAAGAGGGTTGCGTTGCAGCGGAAAGGGGCTGCTGCTATGATTGCTGCTGAGGAGTATGCTCGCCGGTTTGAGTCACCGGATTTTGCTGATACTTCTGGAAACCTCACCGGAGAAGAACTGGGTCAATCTAATGTCAAAGTCTTTTGTCGGATGTGCAACCGTGTCGAAAATGAAGGAAGTGAGAGAGCTAAAAAGATGCTTTCTTGCAAAAATTGTAGTAAGAAATACCATAGGAACTGCTTGAGAAGTTGGGGTCAACATAGAGATTTATTTCATTGGAGTTCATGGACTTGTCGTGCTTGTCGAATTTGCGAGGCTTGCAGAAGGACTGGAGATCCAAGTAAGTTCATGTTCTGCAAAAGATGTGATGGTGCTTACCATTGTTATTGTCTGCATCCTCCTCATAAGAATATTAGTAATGGGCCCTATTTGTGCCCAAAACACACAAGGTGTCACAGCTGTGGGTCGAATGTCCCTGGAAATGGACTAAGTCTGAGGTGGTTTCTGGGATACACCTGCTGTGATGCATGTGGAAGATTGTTTGGGAAAGGGAACTACTGTCCTGTTTGTTTAAAGGTTTATCGAGATTCAGAACCAACTCCCATGGTATGCTGTGATAGTTGCCAGCGCTGGGTGCATTGCCAGTGTGATAATATTAGTGATGAAAGATATCACCAATTTCAAGTGGATGGGAATCTGCAGTATAAATGTCCGACTTGTCGTGGGGAGTGTTATCAGGTCAAGGATCTTGAGGATGCTGTTCAGGAACTTTGGAGGCGAAGAGATATTGATGACAGAGATTTAATTGCCAGCTTGAGGGCTGCAGCTGGCTTACCAACTCAAGAAGAAATATTTTCTATTTCACCTTATTCAGATGATGAGGATAGTGGACCTGGGCGTTCCTTTAAGTTTTCTCTGAAGAATTTCTCTGATAAATCTCCAAAGGCCACAGATTACAGAAAGAAATCTTCAAGCAAAAAGCATTCTAAGAGAAAGGGCTCACAGTTATTTATAAATGGTAAAACTGATCCACACCATAGTTTTGAAGGACATAGTGATGTCAAATCATTACAGAGTTTGGATAATGTTATCCAATCCCACAGAAATGAATCTCATGTTTATTCATCACCTGCTGCTGCAAGCCTGAGCCAGACAGAAGGGTCTTACCCTGTCAGTCAGCCTGGGATTTTAAGACACAAGTCTGTGGACGATGTGATGGTTAGTGATGAAGAGAGGAAAAGCAGAGTTGTTCTAATTAAAAGCAATAAGGCACATACTCTGGATAGCGAAGACGAGAGTGGAAAACACAGTGATAAGAGTCAGAATGTGAAAGGGAAGAAGTTGGTTATAAATTTTGGGGCACGGAAAATAAATGTGGCTAGTTCTCCACGGTCTGATACTTCGAGCTGCCAAAGAGATAATCAACTACTGGTTGCCCCTAATGGAAACAGAATTGATGCTGGTCAATCAAAAGTTTTCAAGGCTTCAGGAAGAGAAGGAAATTTCATTAAGCTGGGAAAATTGAAGTCAGAAGTTTCTCAATTGAATTCAGTCTCTGTTAGAGGCAATGTGTTAGACGGTTGTGAAGCTGTTCATTCAGAGCGACCTCACATCTTTATAGAAAAAAATTGTACAGATGGAGTGATCAATCAAGTTGGAGCCATGGATGCTATGCCGAGAGGTGAAAGAATGTATTTAGGGAAGTTGTCAGAAGGCAGATCTGACGCACATGATGATATAGATAACAATAATAATCAGAAACCTTCACATGTTTTGCCAAAAGAAACAAAACCTTTACTGAAATTTAGATTGAAGAAACCTCCAATTGAAAATGAAAACACTATTCATGGGGAGGAGAAGATTACAATCAAGGGCCAGAGATCAAAAAGGAAGAGACCTTCACCTTTTATGGAGAAAAAACCATTTAATGAGGATGACGATGTAGCACAATCACATGAACACATGGATGTGAACTTGATATTGATGAAATTAGGTAAAGATGCAATTGGAAAGAGAGTTGAAGTTCATCAGACATCCGACAAGCACAAGGGAGTGGTTACTGACATGGTTGATGGAACTTCAAAGTTACATGTTACCCTAGACGACGGGAGGGTACATATCTTAGAACTCAGTAAGCAAGCGGTTCGTTTCGTTCCTCAAAAGGAGAAGAAATCAAGAACATGA 2490 0.4281 MAFHVACPITCRRICFCPLGFPRSSNNDLFNDVVSRLSVFLSDPSGIRVNGDRTVQVVVPKVVPPPPPPPQVLPPCSMVPAAVGVSVADCDLVVEEAASAQAKRVALQRKGAAAMIAAEEYARRFESPDFADTSGNLTGEELGQSNVKVFCRMCNRVENEGSERAKKMLSCKNCSKKYHRNCLRSWGQHRDLFHWSSWTCRACRICEACRRTGDPSKFMFCKRCDGAYHCYCLHPPHKNISNGPYLCPKHTRCHSCGSNVPGNGLSLRWFLGYTCCDACGRLFGKGNYCPVCLKVYRDSEPTPMVCCDSCQRWVHCQCDNISDERYHQFQVDGNLQYKCPTCRGECYQVKDLEDAVQELWRRRDIDDRDLIASLRAAAGLPTQEEIFSISPYSDDEDSGPGRSFKFSLKNFSDKSPKATDYRKKSSSKKHSKRKGSQLFINGKTDPHHSFEGHSDVKSLQSLDNVIQSHRNESHVYSSPAAASLSQTEGSYPVSQPGILRHKSVDDVMVSDEERKSRVVLIKSNKAHTLDSEDESGKHSDKSQNVKGKKLVINFGARKINVASSPRSDTSSCQRDNQLLVAPNGNRIDAGQSKVFKASGREGNFIKLGKLKSEVSQLNSVSVRGNVLDGCEAVHSERPHIFIEKNCTDGVINQVGAMDAMPRGERMYLGKLSEGRSDAHDDIDNNNNQKPSHVLPKETKPLLKFRLKKPPIENENTIHGEEKITIKGQRSKRKRPSPFMEKKPFNEDDDVAQSHEHMDVNLILMKLGKDAIGKRVEVHQTSDKHKGVVTDMVDGTSKLHVTLDDGRVHILELSKQAVRFVPQKEKKSRT 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0669 829 MobiDBLite consensus disorder prediction 528 545 - -
Lal20g0669 829 ProSiteProfiles Zinc finger PHD-type profile. 148 206 IPR019787 -
Lal20g0669 829 Pfam PHD-finger 288 343 IPR019787 -
Lal20g0669 829 MobiDBLite consensus disorder prediction 471 493 - -
Lal20g0669 829 PANTHER PHD FINGER FAMILY PROTEIN 2 823 - -
Lal20g0669 829 MobiDBLite consensus disorder prediction 389 454 - -
Lal20g0669 829 ProSiteProfiles Zinc finger PHD-type profile. 286 345 IPR019787 -
Lal20g0669 829 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 260 IPR013083 -
Lal20g0669 829 SUPERFAMILY FYVE/PHD zinc finger 143 204 IPR011011 -
Lal20g0669 829 SUPERFAMILY FYVE/PHD zinc finger 195 256 IPR011011 -
Lal20g0669 829 MobiDBLite consensus disorder prediction 726 745 - -
Lal20g0669 829 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 283 345 IPR013083 -
Lal20g0669 829 PANTHER HISTONE ACETYLTRANSFERASE 2 823 - -
Lal20g0669 829 SUPERFAMILY FYVE/PHD zinc finger 285 344 IPR011011 -
Lal20g0669 829 ProSitePatterns Zinc finger PHD-type signature. 151 203 IPR019786 -
Lal20g0669 829 MobiDBLite consensus disorder prediction 675 694 - -
Lal20g0669 829 MobiDBLite consensus disorder prediction 528 547 - -
Lal20g0669 829 SMART PHD_3 288 343 IPR001965 -
Lal20g0669 829 SMART PHD_3 150 204 IPR001965 -
Lal20g0669 829 SMART PHD_3 205 251 IPR001965 -
Lal20g0669 829 MobiDBLite consensus disorder prediction 471 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0669 Lal-Chr20 6272854 6282358 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal20g0669 PHD 7.1e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0669 - - mtr:MTR_4g037745 1078.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0669 20 6272854 6282358 Lal20g0669 20 6272854 6282358 ECH