Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0660 ATGGAAGCCGCAGTGGTTGACGCTGGTTCAAGTCTCCTCAAAGCAGGTTTTGCAATTCCCGACCAATCTCCCGCCATGATAATTCCGACGCAGATGAAAAGAATGCTTGATGATGGTGCATTGACTGAGAATCCGGTTGTTGATGAGGTTGCGGTTGAGCCCGTGGTGCGAGGTTATATAACGGATTGGGATGCAATGGAAGATTTGTTGAATTATGTTTTGTATTCTGGACTTGGATGGGAAATTGGCAATGAAGGACAGATACTATTTACAGATCCACTTTGTACCCCAAAGGCTAACAAAGAACAGTTAGTGCAATTAATGTTTGAAACATTCAACATATCAGGGTTTTATGCCTCAGAACAAGCAGTGTTATCGCTATATGCTATGGGACGTATCTCTGGATGCACTGTCGATATTGGTCATGGAAAAATAGATATTGCACCAGTAATTGAGGGTGCTGTGAACCACATTGCCTCAAGAAGATTTGAGTTTGGAGGTATTGATCTAACTAATTTCCTGGCTCGAGAACTTGGCAAATCCAATCCACTAGTGAATATCAGCATATCCGATGTTGATAAAATAAAACAGCAATACACATGTTGTGCTGAAGATGAATTAGCTTATCAGAAGATCAAAGATTCCTGTACTGTGGAGAAGCATATCCTTCCTGATGGGCAGGTGATATCAATTGGAAGAGAAAGGTACACTATTGGTGAAGCTTTATTCCAGCCATCTCTTTTGGGTTTAGAGGCTCATGGCATTGTTGAGCAGCTTGTCCGTACTATTTCAACAGTACCATCTGATAATCATCGGCAACTTCTGGAAAATACTGTGGTTTGTGGAGGCACTTCTTCTATGCCTGGTTTTGAAGAGAGATTTCAGAAGGAATCTAGCCTAAGTTCATCTGCTGTTCGACCTACAATAGTTAAGCCTCCAGAATACATGCCGGAAAATTTAACCATGTATTCTGCATGGGTAGGAGGTGCCATACTTGCCAAAGTTGTATTTCCACAAAATCAGCATGTAACTAAAGCAGACTATGATGAAACTGGACCTTCCATTGTTCACAAGAAATGCTTCTGA 1086 0.4144 MEAAVVDAGSSLLKAGFAIPDQSPAMIIPTQMKRMLDDGALTENPVVDEVAVEPVVRGYITDWDAMEDLLNYVLYSGLGWEIGNEGQILFTDPLCTPKANKEQLVQLMFETFNISGFYASEQAVLSLYAMGRISGCTVDIGHGKIDIAPVIEGAVNHIASRRFEFGGIDLTNFLARELGKSNPLVNISISDVDKIKQQYTCCAEDELAYQKIKDSCTVEKHILPDGQVISIGRERYTIGEALFQPSLLGLEAHGIVEQLVRTISTVPSDNHRQLLENTVVCGGTSSMPGFEERFQKESSLSSSAVRPTIVKPPEYMPENLTMYSAWVGGAILAKVVFPQNQHVTKADYDETGPSIVHKKCF 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0660 361 Gene3D - 5 355 - -
Lal20g0660 361 Gene3D Actin; Chain A, domain 4 165 252 - -
Lal20g0660 361 SUPERFAMILY Actin-like ATPase domain 2 138 IPR043129 -
Lal20g0660 361 CDD NBD_sugar-kinase_HSP70_actin 4 168 - -
Lal20g0660 361 Pfam Actin 2 361 IPR004000 -
Lal20g0660 361 PANTHER BNACNNG31150D PROTEIN 1 360 - -
Lal20g0660 361 SMART actin_3 1 361 IPR004000 -
Lal20g0660 361 Gene3D - 123 324 - -
Lal20g0660 361 PANTHER ACTIN 1 360 IPR004000 -
Lal20g0660 361 PRINTS Actin signature 45 67 IPR004000 -
Lal20g0660 361 PRINTS Actin signature 100 113 IPR004000 -
Lal20g0660 361 PRINTS Actin signature 125 144 IPR004000 -
Lal20g0660 361 PRINTS Actin signature 217 233 IPR004000 -
Lal20g0660 361 SUPERFAMILY Actin-like ATPase domain 131 361 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0660 Lal-Chr20 6217737 6224941 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0660 5 361 Cytoskeleton Gene Families AT5G09810 37.333 1.78e-71 226
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0660 20 6217737 6224941 Lal20g0660 20 6217737 6224941 ECH