Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0649 ATGTGCGGTGGTCCAGAGAAATCAAAATCTCCATCTTCATCTGTCGCAGAAGGTTCAACTAACGTTGAAGACATGAAAAATCTAACTGTTCATACTGAAGATTCCTTTTCCAGCTTACTTGAGCTTGCTTCTAACAATGATTTTGAAGATTTTAAGCTAGTCTTAGATAAGGATGCTTCTCTAATTAATGAAGCTGGGCTATGGTATGTTCGTCGAAATGGCTCTAAACAAGTTGTTCTTGAGCATAGAACTCCTTTAATGGTTGCTGCTACCTATGGGAGCATGGATGTTGTAAAGCTTATACTCTCGTACCCAGAAGCTGATGTAAACTTCTCTTGCGGGGCAGATAAAAGCACTGCTCTTCATTGTGCTGCTTCTGGTGGATCTATCGATGCAGTTGGTGTTGTGAAGCTTCTTATATCAGCTGGTGCTGATATCCATCGTGTGGATGCTAATGGAAACCGTCCTATAGATGTTATTGTCGTTCCTTTTAAGCTTCAAGGCATGAAAGCAATTCTTGTTGAACTTCTTTCAGATAGTGCATCTGATGGGTCTGTTGATGACTGCTTTATCCCACCTTCTGTTGGTTCGTCAAGTCCTGCTTCAACTGCTCATTTATCACCACTTGAATATGGGTTGCCATCCTCTCCTTCAGGCTCACCACCTTCTCCTGTGGCCTCAAAGTTTATTGATACACCTGAGAAGAAGGAATATCCAACTGATCCATCACTTCCTGATATAAAAGACAGCATATATGCAACAGATGAGTTTCGCATCTTCTCCTTCAAGGTCCGTCCTTGTTCCCGTGCATACTCTCATGATTGGACTGAGTGTCCTTTTGTTCATCCTGGAGAGAATGCTCGCAGGAGAGACCCCAGAAAGTTCCATTACAGCTGTGTTCCATGCCCTGATTTTAGAAAGGGGGCTTGTAGACGTGGGGATATGTGTGAATATGCTCACGGTGTATTTGAAAGCTGGCTGCACCCAGCCCAGTATCGGACAAGGCTTTGCAAAGATGGTACTAGTTGCAACAGAAGGGTATGTTTTTTTGCTCACGCAGTAGAAGAGCTGCGTCCAATGTATGGATCCACAGGTTCAGCTGGCCATTCTCCCCGCTCACCTGCTTCTGCTCCTAATGTCATGGACATGGCTGCTGCTATGAGCCTTTTTCCTGGTTCACCCTCATCTATGTCTTCCATGTCTCCGTCCCCCTTTGCTCAGCCTATGTTTCCATCCGCAAATGGCATCTCTAATTCGTCTGCTGGTGGTTGGCCCCAGCCAAATGTGCCAGCTCTTCATTTACCAGGAAGCAATCTCCAATCTAGTCGCTTGAGATCTTCTTTTAATGCTCGTGACATGCCACAAGAAAGCTTGAATATGTTGCCAGATTTTGATGGGCAGCAGCATCTTTTCAATGACTTGAGCTGTTTCTCTCAGCACCATCCTGGTGTTGTTTCAGTGAGTCGTTCCGGCCGGGCGAAGACACTAACCCCATCTAATCTTGATGAGCTTTTTTGTTCTGATATTTCTTCATCTCCTCGATATTCCGATCCAGCAGCGGCTTCTGTATTTTCTCCAACACACAAATCAGCTGTGTTCAATCACTTTCAACAGCTTCAAAGTACATTAGCACCCATAAATACAAATGCCTTGTCACCTAAAAATGTTGAGCATCACCTATCACAAGCATCATTTGGTGTCTCTTCTCCTGGAAGGATGTCACCAAGAAGTATGGAATCAATCTCTCCGATGAGCTCTCGTTATTCAGCATTTGCTCACCGCGAGAAACCTCAGCAACAGCTGTGGAGCCCTAACTCAAGGGACCTTGTTGTTAACACTTCTGCTTCAGTTGTTGGGTCCCCTGTAAACTCCTGGTCCAAATGGGGATCTCCTCATGGAAAAGCAGATTGGTCAATAAATGGAAATGAACTAGGTCCCTCGTTTGAGCACGGGAATAATGGGGAGGGGCCTGATCTATCATGGGTTCAATCTCTTGTCAAGGAATCTCCACCTGAAATGATAAAGGAGAACTTTGCAGGTTCTGGCCCTATTGCATCTGCTGCTGATGGATTGAAAACCAATCCTCAAATTGAATCCATTGATCATTCTGTTTTAGGTGCCTGGCTTGAGAAAATGCAGCTGGATCAGTTTGTTGTCTAA 2160 0.4468 MCGGPEKSKSPSSSVAEGSTNVEDMKNLTVHTEDSFSSLLELASNNDFEDFKLVLDKDASLINEAGLWYVRRNGSKQVVLEHRTPLMVAATYGSMDVVKLILSYPEADVNFSCGADKSTALHCAASGGSIDAVGVVKLLISAGADIHRVDANGNRPIDVIVVPFKLQGMKAILVELLSDSASDGSVDDCFIPPSVGSSSPASTAHLSPLEYGLPSSPSGSPPSPVASKFIDTPEKKEYPTDPSLPDIKDSIYATDEFRIFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFESWLHPAQYRTRLCKDGTSCNRRVCFFAHAVEELRPMYGSTGSAGHSPRSPASAPNVMDMAAAMSLFPGSPSSMSSMSPSPFAQPMFPSANGISNSSAGGWPQPNVPALHLPGSNLQSSRLRSSFNARDMPQESLNMLPDFDGQQHLFNDLSCFSQHHPGVVSVSRSGRAKTLTPSNLDELFCSDISSSPRYSDPAAASVFSPTHKSAVFNHFQQLQSTLAPINTNALSPKNVEHHLSQASFGVSSPGRMSPRSMESISPMSSRYSAFAHREKPQQQLWSPNSRDLVVNTSASVVGSPVNSWSKWGSPHGKADWSINGNELGPSFEHGNNGEGPDLSWVQSLVKESPPEMIKENFAGSGPIASAADGLKTNPQIESIDHSVLGAWLEKMQLDQFVV 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0649 719 Gene3D - 296 359 - -
Lal20g0649 719 SMART ANK_2a 116 148 IPR002110 GO:0005515
Lal20g0649 719 SMART ANK_2a 81 111 IPR002110 GO:0005515
Lal20g0649 719 PANTHER UNKEMPT FAMILY MEMBER 19 716 IPR045234 -
Lal20g0649 719 MobiDBLite consensus disorder prediction 201 229 - -
Lal20g0649 719 ProSiteProfiles Ankyrin repeat region circular profile. 116 150 - -
Lal20g0649 719 Pfam Ankyrin repeats (3 copies) 45 150 IPR002110 GO:0005515
Lal20g0649 719 MobiDBLite consensus disorder prediction 1 24 - -
Lal20g0649 719 ProSiteProfiles Zinc finger C3H1-type profile. 301 323 IPR000571 GO:0046872
Lal20g0649 719 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 19 716 - -
Lal20g0649 719 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 301 321 IPR000571 GO:0046872
Lal20g0649 719 SMART c3hfinal6 296 322 IPR000571 GO:0046872
Lal20g0649 719 SMART c3hfinal6 331 354 IPR000571 GO:0046872
Lal20g0649 719 SUPERFAMILY Ankyrin repeat 30 160 IPR036770 -
Lal20g0649 719 ProSiteProfiles Ankyrin repeat profile. 116 151 IPR002110 GO:0005515
Lal20g0649 719 MobiDBLite consensus disorder prediction 7 24 - -
Lal20g0649 719 Gene3D - 21 171 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0649 Lal-Chr20 5990626 5992785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0649 1 716 C2H2 Transcription Factor Family AT5G12850 50.135 0.0 637
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal20g0649 Ank_2 1.2e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0649 - - gmx:100792574 1060.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0649 20 5990626 5992785 Lal20g0649 20 5990626 5992785 ECH