Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0632 ATGTCTCAAAAGACAGAAAACGAAGAAACCGAATTCAAGGTTCCTGAAACCATAACCACCTGTGTCAACAATTGTGGTCTCACAGGTAACCCTACAACCAATAACATGTGTCAGAACTGCTTCACCGCCACCACGGTAACCACCGTGATCTCACCTCATTCTTCTAGATCTGTTAACGGAAACGGTGTTGTTTCTTGCTCACGGAAGAGATCTTACACGGAGCAACGTGATGATTATCATAGAATTGATGAAACGACGACGTGTGAGGTGAAGCGTGTTGTTAACAGGTGTTCAAGTTGTCGGAGGAAGGTTGGTCTCACCGGATTTAGGTGCCGGTGCGGTGATGTTTTTTGCGGCGAGCATCGTTATTCTGATAGACATGATTGTAGTTATGATTATAAAGGTGCTGGTAAAGAAGCTATTGCTAGAGAAAACCCTGTGATTAGAGCTTCGAAGATTGTTAAGGTTTAA 471 0.4352 MSQKTENEETEFKVPETITTCVNNCGLTGNPTTNNMCQNCFTATTVTTVISPHSSRSVNGNGVVSCSRKRSYTEQRDDYHRIDETTTCEVKRVVNRCSSCRRKVGLTGFRCRCGDVFCGEHRYSDRHDCSYDYKGAGKEAIARENPVIRASKIVKV 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0632 156 Pfam A20-like zinc finger 21 41 IPR002653 GO:0003677|GO:0008270
Lal20g0632 156 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 5 1 156 - -
Lal20g0632 156 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 21 48 - -
Lal20g0632 156 Pfam AN1-like Zinc finger 97 134 IPR000058 GO:0008270
Lal20g0632 156 SUPERFAMILY AN1-like Zinc finger 84 151 IPR035896 -
Lal20g0632 156 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 156 - -
Lal20g0632 156 ProSiteProfiles Zinc finger A20-type profile. 15 49 IPR002653 GO:0003677|GO:0008270
Lal20g0632 156 Gene3D - 70 152 IPR035896 -
Lal20g0632 156 SMART AN1_Zf_4 97 134 IPR000058 GO:0008270
Lal20g0632 156 Gene3D - 1 61 - -
Lal20g0632 156 ProSiteProfiles Zinc finger AN1-type profile. 91 137 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0632 Lal-Chr20 5815451 5815921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0632 8 156 C2H2 Transcription Factor Family AT3G52800 34.524 1.54e-29 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0632 - - var:108333085 224.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1488 1 16886739 16887360 Lal20g0632 20 5815451 5815921 ECH
Lal20g0632 20 5815451 5815921 Lal20g0632 20 5815451 5815921 ECH
Lal20g0632 20 5815451 5815921 Lal1g1488 1 16886739 16887360 LSH