Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0624 ATGAGTGTTATGTATAGTCATGTTTTCAAGTATTCAGAAGAGGAAGAAGCTTATAGAAGTGAAGAAAATGAGATTCAGCAGTGTTATGTTCCAAGTACAAGTTCAGAAATGGATACCATGTTGTCCAATTTGATATCTTCCAACAATGAATGGAACAATTCTCAACCTTTGCAAGAGTTTGGAGACAAATCTGTGAAGCAGGAAGCAGGAAGAGAATTTATTTCACAACAGAATGGTTACTCTTATGGAGGGTCTCAAACTCAGTTAATTTACCAATCACAGCAATCTGCAATGGATTTCAGGAATTGCTCTAATCTCATTAGGCGAAAGAGTTCCGATCCTGAATTTTTCGCCAATGAAAATGTTCTTGAAGCATTGAGAGAGGTCGGAAGCTTTCGGGTCAGTAATGTCTCAAATGGACAGACTACTGCATCAACGACCGGGTTGCATAGAACTCTTGCCTTCCAATCTAAGCCATCCTCGTGCTTGAACCGGATTCCACAGATCGACGAGAATGAAAATGAAAGACTAGAAGCAAATTGTGAGCAAAATAGAAACCTGGTAAATGACAATGGCAGCTCTGATTTTTATATGCCTAGCTTCTCCAATGAATTTTGGGAAGATTCTGAATTCAATGCTCAGAAAACAGCAATTGAAGAACATGAAATCATGTTTTCTGCATCAAATGCTTTGGAATCTCAGGATGCAGAATTTTGCTATCAGAATCTTGGTTTGACTAACCATTTGAGCCTACCTAGTTCATTCTCTAAGATGGCATCCACAGATAAGTTCCTCCAAATTCAAGGATCCATCCCTTGCAAAACTCGAGCCAAACGAGGTTTCGCCACTCACCCGAGAAGCATTGCAGAGAGGGTACGAAGAACGCGAATTAGCGAAAGAATCAAGAAATTGCAAGGTCTTTTCACACTATCAGACAAGCAAACAAGTACCTCAGATATGTTGGATATGACATTTGATTACATTAAAGACCTTCAGGATCAAGTTAAGATACTGGCAGATAGAAGAGCAAAGTGCAAATGTACAAGTAATCAGAAGCAATACTATTCAAATTCTGGCTGA 1080 0.3917 MSVMYSHVFKYSEEEEAYRSEENEIQQCYVPSTSSEMDTMLSNLISSNNEWNNSQPLQEFGDKSVKQEAGREFISQQNGYSYGGSQTQLIYQSQQSAMDFRNCSNLIRRKSSDPEFFANENVLEALREVGSFRVSNVSNGQTTASTTGLHRTLAFQSKPSSCLNRIPQIDENENERLEANCEQNRNLVNDNGSSDFYMPSFSNEFWEDSEFNAQKTAIEEHEIMFSASNALESQDAEFCYQNLGLTNHLSLPSSFSKMASTDKFLQIQGSIPCKTRAKRGFATHPRSIAERVRRTRISERIKKLQGLFTLSDKQTSTSDMLDMTFDYIKDLQDQVKILADRRAKCKCTSNQKQYYSNSG 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0624 359 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 32 351 - -
Lal20g0624 359 Pfam Helix-loop-helix DNA-binding domain 286 332 IPR011598 GO:0046983
Lal20g0624 359 SMART finulus 287 337 IPR011598 GO:0046983
Lal20g0624 359 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 32 351 - -
Lal20g0624 359 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 281 331 IPR011598 GO:0046983
Lal20g0624 359 Gene3D - 282 356 IPR036638 GO:0046983
Lal20g0624 359 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 283 347 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0624 Lal-Chr20 5650671 5653927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0624 245 337 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 68.750 6.75e-37 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal20g0624 HLH 4.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0624 - - gmx:100812802 439.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0624 20 5650671 5653927 Lal20g0624 20 5650671 5653927 ECH