Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0619 ATGATTACTCTCTACTCTTCTATTCTCTCACAACCCAATCTCATTTCCCTCACTTCAGCACCAACTACTTCCTCCAACCACACCATTCTCAGTTTCAAACCCATCATACCAACAACCCATGTTCTCAACTTTCTTCCTTCTCTCTCTTTTTCTGCAACAACTCCCAAACGACACCGTTCTCTGACACCCTTTGCCGTTGCTGAAGAAACTTCCACTGTTACTGACGTGGCTTCTAGGAAACTCTATGTTGGCAACATTCCTCGTACTGTAAATGACGCTGAACTTGCGAATATTATTCAGGAACATGGTTCTGTTGAGAAAACTGAGGTTATGTATGATAAGTACTCTGGAAGGAGCCGTCGCTTTGCGTTTGTTACAATGAAAACCGTTGAGGATGCTAATGCAGTAATCGAAAAACTTAATGGCACTCAAATAGGAGGGCGTGAGGTCAAAGTTAATATAACCGAAAAACCTTTGCAAACAGGAGATTTGCCTTCACTCCAGTCTGAGGAATCCGAATTTATTGACAGTCCTTACAAGGTATACGTGGGAAATCTGGCCAAGAAAGTAACATCAGATATTCTTAAGAACTTTTTCTCCGAGAAGGGGAAAGTTCTTAGTGCCAAGGTTTCACGGGTTCCTGGGACCTCAAAGTCTACCGGGTTTGGTTTTGTTACCTTTTCTTCCGATGAGGACGTAGAAACTGCAATCTCATCTTTTAACAATTCTTTGTTAGAAGGGCAAAATATTCGTGTGAATAAGGCGTAA 768 0.418 MITLYSSILSQPNLISLTSAPTTSSNHTILSFKPIIPTTHVLNFLPSLSFSATTPKRHRSLTPFAVAEETSTVTDVASRKLYVGNIPRTVNDAELANIIQEHGSVEKTEVMYDKYSGRSRRFAFVTMKTVEDANAVIEKLNGTQIGGREVKVNITEKPLQTGDLPSLQSEESEFIDSPYKVYVGNLAKKVTSDILKNFFSEKGKVLSAKVSRVPGTSKSTGFGFVTFSSDEDVETAISSFNNSLLEGQNIRVNKA 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0619 255 SMART rrm1_1 80 153 IPR000504 GO:0003723
Lal20g0619 255 SMART rrm1_1 180 253 IPR000504 GO:0003723
Lal20g0619 255 SUPERFAMILY RNA-binding domain, RBD 72 159 IPR035979 GO:0003676
Lal20g0619 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 181 251 IPR000504 GO:0003723
Lal20g0619 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 151 IPR000504 GO:0003723
Lal20g0619 255 Gene3D - 164 255 IPR012677 -
Lal20g0619 255 Gene3D - 51 162 IPR012677 -
Lal20g0619 255 CDD RRM_HP0827_like 80 157 - -
Lal20g0619 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 255 IPR000504 GO:0003723
Lal20g0619 255 PANTHER 30S RIBOSOMAL PROTEIN 2, CHLOROPLASTIC 3 255 - -
Lal20g0619 255 PANTHER OS02G0815200 PROTEIN 3 255 - -
Lal20g0619 255 SUPERFAMILY RNA-binding domain, RBD 174 255 IPR035979 GO:0003676
Lal20g0619 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 157 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0619 Lal-Chr20 5571911 5575205 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0619 81 255 Eukaryotic Initiation Factors Gene Family AT4G34110 32.022 1.82e-18 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0619 K13126 - gmx:100811197 333.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0619 20 5571911 5575205 Lal20g0619 20 5571911 5575205 ECH