Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0614 ATGGCAAAACCTACACCCAAAATGGGTTTGCGTAAAAATGGACGTATTGGTTCACGTAAGCATGCTCGTAAAATACCAAAGGGAGTTATTCATGTTCAAGCTAGTTTCAACAATACCATTGTGACTGTTACAGATGTACGGGGGCGGGTAATTTCTTGGTCCTCCGCCGGTACTTGTGGATTCAAGGGTACACGAAGAGGCACACCTTTTGCCGCTCAAACCGCAGCAGCAAATGCTATTCTAACAGTAGCGGATCAAGGCATGCAACGGGCGGAAGTCATGATAAAAGGTCCCGGTCTCGGAAGAGATGCGGTATTAAGAGCTATTCGTAGAAGTGGTCAAGCCGATACAATAGGCATTGCAATGCGAAGAGTTTTACTCGGAGAAATCGAGGGAACATGTATTACACGTGCAAAATCTGAGAAAATACCACATGAATATTCGACGCTAGTAGGTATTCAAGAATCAGTCCACGAAATTTTAATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTGTATGAAACTCGGGACGCGTCTATTTTTGTCAAAGGTCCTGGATATGTAACTGCTCAAGACATCCTTTTACCACCTTCTGTGGAAATCGTTGATAATACACAACATATAGCTAATCTAACAGAACCCATTAATTTTTATATTGGATTACAAATCGCAAGAAATCGCGGATATCGTATAAAAACACTAACTAAATTTCAAGACAGAAGTTATCCTATAGATGTTGTATTCATGTCTGTTCGAAATGTAAATCATAGTATTCATTCTTACGTGAATGGTAATGAAAAACAAGAAATACTTTTTCTCGAAATATGGACAAATGGAAGTTTAACTCCTAAAGAAGCGCTTTTTGAAGCCTCCCGGAATTTGATTGATTTATTTATTCCTTTTTTGCATGCGGAAGAAGAAAACTTAAATTTCGAAAACAATCAACACAATGTTAATTTACCCCCTTTTACTTTTGATGATATATTTGAGAAACGAAGGAAAAATAAAAAAGAAATAGCATTGAAATCCATTTTTATTGACCAATTAGAATTGTCTCCCAGGATCTATAATTGTCTCAAAAGGTCCAATATACATACATTATTTGACCTTTTAAATAACAGTCAAGAAGACCTTATGAAAATGGAACATTTTCGCGTAGAAGATGTAAAAGATATATTGGATATTTTAGAAATCAAAAAGCATTTTACATAA 1215 0.3588 MAKPTPKMGLRKNGRIGSRKHARKIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAANAILTVADQGMQRAEVMIKGPGLGRDAVLRAIRRSGQADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTLVGIQESVHEILMNLKEIVLRSNLYETRDASIFVKGPGYVTAQDILLPPSVEIVDNTQHIANLTEPINFYIGLQIARNRGYRIKTLTKFQDRSYPIDVVFMSVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALFEASRNLIDLFIPFLHAEEENLNFENNQHNVNLPPFTFDDIFEKRRKNKKEIALKSIFIDQLELSPRIYNCLKRSNIHTLFDLLNNSQEDLMKMEHFRVEDVKDILDILEIKKHFT 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0614 404 TIGRFAM rpoA: DNA-directed RNA polymerase, alpha subunit 112 398 IPR011773 GO:0003677|GO:0003899|GO:0006351
Lal20g0614 404 SUPERFAMILY Insert subdomain of RNA polymerase alpha subunit 132 250 IPR036643 -
Lal20g0614 404 Pfam RNA polymerase Rpb3/RpoA insert domain 139 231 IPR011262 GO:0003899|GO:0006351|GO:0046983
Lal20g0614 404 Gene3D Ribosomal protein S11 11 131 IPR036967 GO:0003735|GO:0005840|GO:0006412
Lal20g0614 404 MobiDBLite consensus disorder prediction 1 23 - -
Lal20g0614 404 Pfam RNA polymerase Rpb3/Rpb11 dimerisation domain 113 298 IPR011263 GO:0003899|GO:0006351
Lal20g0614 404 Pfam Bacterial RNA polymerase, alpha chain C terminal domain 336 398 IPR011260 GO:0003677|GO:0003899|GO:0006351
Lal20g0614 404 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA 79 402 IPR011773 GO:0003677|GO:0003899|GO:0006351
Lal20g0614 404 Pfam Ribosomal protein S11 28 114 IPR001971 GO:0003735|GO:0005840|GO:0006412
Lal20g0614 404 SUPERFAMILY Translational machinery components 23 113 - -
Lal20g0614 404 Gene3D - 132 250 IPR036643 -
Lal20g0614 404 CDD RNAP_alpha_NTD 113 302 - -
Lal20g0614 404 SMART rpoldneu2 103 305 IPR011263 GO:0003899|GO:0006351
Lal20g0614 404 Hamap 30S ribosomal protein S11 [rpsK]. 11 142 IPR001971 GO:0003735|GO:0005840|GO:0006412
Lal20g0614 404 SUPERFAMILY C-terminal domain of RNA polymerase alpha subunit 341 398 - -
Lal20g0614 404 SUPERFAMILY RBP11-like subunits of RNA polymerase 113 304 IPR036603 GO:0006351|GO:0046983
Lal20g0614 404 Gene3D - 330 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0614 Lal-Chr20 5504223 5505712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0614 28 113 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 35.789 4.03e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0614 K03040 - gmx:3989329 498.434