LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal20g0614	ATGGCAAAACCTACACCCAAAATGGGTTTGCGTAAAAATGGACGTATTGGTTCACGTAAGCATGCTCGTAAAATACCAAAGGGAGTTATTCATGTTCAAGCTAGTTTCAACAATACCATTGTGACTGTTACAGATGTACGGGGGCGGGTAATTTCTTGGTCCTCCGCCGGTACTTGTGGATTCAAGGGTACACGAAGAGGCACACCTTTTGCCGCTCAAACCGCAGCAGCAAATGCTATTCTAACAGTAGCGGATCAAGGCATGCAACGGGCGGAAGTCATGATAAAAGGTCCCGGTCTCGGAAGAGATGCGGTATTAAGAGCTATTCGTAGAAGTGGTCAAGCCGATACAATAGGCATTGCAATGCGAAGAGTTTTACTCGGAGAAATCGAGGGAACATGTATTACACGTGCAAAATCTGAGAAAATACCACATGAATATTCGACGCTAGTAGGTATTCAAGAATCAGTCCACGAAATTTTAATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTGTATGAAACTCGGGACGCGTCTATTTTTGTCAAAGGTCCTGGATATGTAACTGCTCAAGACATCCTTTTACCACCTTCTGTGGAAATCGTTGATAATACACAACATATAGCTAATCTAACAGAACCCATTAATTTTTATATTGGATTACAAATCGCAAGAAATCGCGGATATCGTATAAAAACACTAACTAAATTTCAAGACAGAAGTTATCCTATAGATGTTGTATTCATGTCTGTTCGAAATGTAAATCATAGTATTCATTCTTACGTGAATGGTAATGAAAAACAAGAAATACTTTTTCTCGAAATATGGACAAATGGAAGTTTAACTCCTAAAGAAGCGCTTTTTGAAGCCTCCCGGAATTTGATTGATTTATTTATTCCTTTTTTGCATGCGGAAGAAGAAAACTTAAATTTCGAAAACAATCAACACAATGTTAATTTACCCCCTTTTACTTTTGATGATATATTTGAGAAACGAAGGAAAAATAAAAAAGAAATAGCATTGAAATCCATTTTTATTGACCAATTAGAATTGTCTCCCAGGATCTATAATTGTCTCAAAAGGTCCAATATACATACATTATTTGACCTTTTAAATAACAGTCAAGAAGACCTTATGAAAATGGAACATTTTCGCGTAGAAGATGTAAAAGATATATTGGATATTTTAGAAATCAAAAAGCATTTTACATAA	1215	0.3588	MAKPTPKMGLRKNGRIGSRKHARKIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAANAILTVADQGMQRAEVMIKGPGLGRDAVLRAIRRSGQADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTLVGIQESVHEILMNLKEIVLRSNLYETRDASIFVKGPGYVTAQDILLPPSVEIVDNTQHIANLTEPINFYIGLQIARNRGYRIKTLTKFQDRSYPIDVVFMSVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALFEASRNLIDLFIPFLHAEEENLNFENNQHNVNLPPFTFDDIFEKRRKNKKEIALKSIFIDQLELSPRIYNCLKRSNIHTLFDLLNNSQEDLMKMEHFRVEDVKDILDILEIKKHFT	404

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal20g0614	404	TIGRFAM	rpoA: DNA-directed RNA polymerase, alpha subunit	112	398	IPR011773	GO:0003677\|GO:0003899\|GO:0006351
	Lal20g0614	404	SUPERFAMILY	Insert subdomain of RNA polymerase alpha subunit	132	250	IPR036643	-
	Lal20g0614	404	Pfam	RNA polymerase Rpb3/RpoA insert domain	139	231	IPR011262	GO:0003899\|GO:0006351\|GO:0046983
	Lal20g0614	404	Gene3D	Ribosomal protein S11	11	131	IPR036967	GO:0003735\|GO:0005840\|GO:0006412
	Lal20g0614	404	MobiDBLite	consensus disorder prediction	1	23	-	-
	Lal20g0614	404	Pfam	RNA polymerase Rpb3/Rpb11 dimerisation domain	113	298	IPR011263	GO:0003899\|GO:0006351
	Lal20g0614	404	Pfam	Bacterial RNA polymerase, alpha chain C terminal domain	336	398	IPR011260	GO:0003677\|GO:0003899\|GO:0006351
	Lal20g0614	404	PANTHER	DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA	79	402	IPR011773	GO:0003677\|GO:0003899\|GO:0006351
	Lal20g0614	404	Pfam	Ribosomal protein S11	28	114	IPR001971	GO:0003735\|GO:0005840\|GO:0006412
	Lal20g0614	404	SUPERFAMILY	Translational machinery components	23	113	-	-

Showing 1 to 10 of 17 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal20g0614	Lal-Chr20	5504223	5505712	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal20g0614	28	113	Cytoplasmic Ribosomal Protein Gene Family	AT3G52580	35.789	4.03e-07	47.8

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal20g0614	K03040		-	gmx:3989329	498.434

Showing 1 to 1 of 1 entries