Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0610 ATGCCCTTAGGCACGACCATACATAACTTAGAAATCACACTCGGAAAGGGTGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTTAGCAACAGTCGGACAAGTGGGGAATGTTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTGGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGAATTTATAGCTGGACAATTAAAGAATAGAGTTTCGTTTCGTAAAGCAATGAAAAAAGCTATTGAATTAACAGAACAGGCAGGTACAAAAGGAGTTCAAGTACAAATTGCAGGACGTATCGACGGAAAAGAAATTGCACGCGTCGAGTGGATTAGAGAGGGTAGGGTTCCTCTACAAACCATTCGAGCTAAAATTGATTATTGTTCCTATCCAGTTCGAACTATTTATGGGATATTAGGGATCAAAGTTTGGATATTTGTAAATTAA 588 0.4269 MPLGTTIHNLEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCLATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGVQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYPVRTIYGILGIKVWIFVN 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0610 195 PANTHER - 1 108 - -
Lal20g0610 195 Gene3D - 1 63 IPR014722 -
Lal20g0610 195 Gene3D - 103 195 IPR036419 -
Lal20g0610 195 SMART Ribosomal_L2_C_2 1 114 IPR022669 GO:0003735|GO:0005840|GO:0006412
Lal20g0610 195 SUPERFAMILY Ribosomal protein S3 C-terminal domain 107 194 IPR036419 -
Lal20g0610 195 Pfam Ribosomal Proteins L2, C-terminal domain 1 107 IPR022669 GO:0003735|GO:0005840|GO:0006412
Lal20g0610 195 PANTHER RIBOSOMAL PROTEIN L2 1 108 IPR002171 GO:0003735|GO:0005840|GO:0006412
Lal20g0610 195 Pfam Ribosomal protein S3, C-terminal domain 110 192 IPR001351 GO:0003735|GO:0006412
Lal20g0610 195 ProSitePatterns Ribosomal protein S3 signature. 153 187 IPR018280 -
Lal20g0610 195 ProSitePatterns Ribosomal protein L2 signature. 84 95 IPR022671 GO:0003735|GO:0005840|GO:0006412
Lal20g0610 195 SUPERFAMILY Translation proteins SH3-like domain 1 113 IPR008991 -
Lal20g0610 195 TIGRFAM rpsC_bact: ribosomal protein uS3 108 194 IPR005704 GO:0003735|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0610 Lal-Chr20 5498833 5500523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0610 1 102 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 44.248 2.03e-20 84.3