Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0605 ATGTGGAAATTTAAGCCTTTCACTCACAAAGAGCCAGCTGGGCTTGAAGGCCGCTCTATAGATGTTGGCAGCGTTAAAATACTTGTCCAGAAGGCCATTGCTGAAGGAGGGTTCTCTTGTGTCTACTTAGCTCGTGATGCTGTACATATGTCAAAACAATATGCTTTAAAGCACATAATATGCAATGACGAAGAATCACTTGCCTTGGTAAAAAAGGAGATATCTGTGATGAAGTCACTTGTAGGACATCCCAATGTTGTCACGCTTCATGCACATACAATCTTTGATATGGGTAGGACAAAAGAGGCATTCCTTGTGATGGAATTTTGTGAGAAGTCTTTGGTTACTGTGCTGGAGAGCCGAGGAGCTGCTTATTTCGATGAGAAACAGATTCTTTTGATCTTCAGGGATGTATGTAATGCAGTTTTCTCTATGCACTGCCAGTCCCCCCCTATTGCTCACCGAGACTTGAAAGCAGAGAATCTTCTACTTGGTTCAGATGGTTTATGGAAGTTGTGTGATTTTGGAAGCACTACCACCAATCACAAATGCTTTGATAAACCAGAAGAAATGGGAATTGAGGAAGACAATATCAGGAAGTACACAACCCCAGCCTATAGGGCTCCTGAGATGTGGGATCTGTTCCTGAGAGAAGTCATTAATGAGAAAGTGGACATATGGGCACTCGGGTGTCTCCTTTTTCGCATATGCTACTTCAAAAGTGCATTTGATGGAGAATCAAAGCTCCAAGTCTTAAATGGAAACTACCGCATTCCTGATTCACCTAAATACAGTTCATCTATGATCGACTTAATCAGAGACATGCTTCAAGCTAGACCAGATGACAGACCTGATATCACGCAGGCAAGAGCTTTGCTTGATTGGCCATTCATGTCATCAATTTAG 906 0.4227 MWKFKPFTHKEPAGLEGRSIDVGSVKILVQKAIAEGGFSCVYLARDAVHMSKQYALKHIICNDEESLALVKKEISVMKSLVGHPNVVTLHAHTIFDMGRTKEAFLVMEFCEKSLVTVLESRGAAYFDEKQILLIFRDVCNAVFSMHCQSPPIAHRDLKAENLLLGSDGLWKLCDFGSTTTNHKCFDKPEEMGIEEDNIRKYTTPAYRAPEMWDLFLREVINEKVDIWALGCLLFRICYFKSAFDGESKLQVLNGNYRIPDSPKYSSSMIDLIRDMLQARPDDRPDITQARALLDWPFMSSI 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0605 301 Gene3D Transferase(Phosphotransferase) domain 1 11 295 - -
Lal20g0605 301 CDD STKc_GAK_like 26 288 - -
Lal20g0605 301 SMART serkin_6 27 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g0605 301 PANTHER SERINE/THREONINE PROTEIN KINASE 1 288 - -
Lal20g0605 301 PANTHER NUMB-ASSOCIATED KINASE, ISOFORM A 1 288 - -
Lal20g0605 301 SUPERFAMILY Protein kinase-like (PK-like) 29 299 IPR011009 -
Lal20g0605 301 ProSiteProfiles Protein kinase domain profile. 27 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g0605 301 Pfam Protein kinase domain 30 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g0605 301 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0605 Lal-Chr20 5404303 5408630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0605 29 290 Miscellaneous Gene Families AT2G34180 28.881 1.30e-19 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Lal20g0605 Pkinase 2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0605 K08853 - gmx:100808507 537.724