Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0603 ATGGAAAATCAACAAAACCAAAACCCAACCCTAGAAGAGGAACAAAACCAGGTTTGGGGCACGTGGGAGGAGCTTTTACTCGCGTGTGCCGTTAACCGCCATGGTTTCAAAGATTGGGACACCGTCGCCATGGAGGTTCAGTCCCGAACCACCCTCTTCGCCACCGCGCGCCACTGCGAACAGAAATTTCACGATCTCAACCGCCGATTCGCTGACCAATGCAACGACGACGACATGACGCTGCGTCGGAACGGCGCCGACGCCGGCGACGGAGCTGATCATGTTCCTTGGGTTGATGAATTGAGGAAACAACGTGTTGATGAGCTCCGGCGAGAGGTTCAACACTACGACGTTTCCATTCTGTCGTTGCAGTTGAAGGTAAAGAGATTAGAAGAAGAAAGAGAGAAAGAAAATTGCAGAAAAGAAGACGAGAAACCAGATCTGGATGTTTCCGTTAAGAAGTTACCTGAGAACGAAAAAACCGGCGAAGAACGAGATGAACCGGAACCGGTAAGTTCTGAACCGGAACCTGTAAGTTCTGAACCGGATATTCGTCGGCTCGATGAAAGCACAACTAACACAGATAAAGTATTACCAACCACTGCTGACGAATCGGACCGAGAGAACCAATCCGTAAACGAGTCTAACTCAACCGGTTCAAGGTTCGAGGGTGGGAAAAGTAAGGACGGTGATGTAATGATGTTAGAAAATGGACTGGATTCTGAACCGGGCCCGGTTCATGATGGTTTAACCGAACCGGTTCAGACCGAAAGGAAGGAGAAACCGGTTGGAGAAGAATCGAATAACGGAAGCTGTGATACCGTGGCAAAGGTTTTAACGTGCGAGTCGGTGCCTCCAAGCGAAGAGAGGGGGAAGGTGGCGGAGGATGATGACTCGTCCGAGTTGCGTGACTCGGTGGCTCACTCGGGAGGGACGAGAGAGAGCAGTGAGGTGCAGAGTTCTGCGAGTTTGACAAGGAAGAGGAATATGCGGCGGAGGAAGGAGGTTTACGGTGGTGATGGTAGCGGCGAGGTGACGGCGGTGGTGAGATCAGAATCGTTGGTTGGCTTGTTAGAATTGATTAGAAGACATGAACACAGCTCGTTGTTCGAGCGCCGTCTTGATAGCCAGGAATCCGATGAATACAAAAACACAGTGAGAAGACACATGGATTTGAAAACCATACAATTGAGACTCCAAAATGGTAACTATTCTTCCCGCACCAGCGAATTCTTCTCAGACCTTTTACTCATCTTCAGCAATGCCATTGTGTTCTTTCCCAAAGACTCTCGCGAATCACAGGTGGCGCAGCAGCTGCGCCACCTTGTGTCCGCCGAGTTGAAGAATCAATGTCCATCGCAGTCCGATCCTATCACCCAGAAAACTGACTCACAATCTCCAAATGCACCGCAAGCCAAACCAGATTCCCTCCTTTCCCAGCAGAAAGCTGCGGCTCCTATTGTGGTTTGCCGCAAACGCAGTTCAATATCAGCCAAACCTTCCTCAGCCACCATTGGCCAAAAGGATGAACAACCCATCATCAATGACAAGGAAAAGCCAATTTCTGCTACAAAACCACCCCTTAAAACCTCTTCTGACACGGATGAAGAGGAGGAGGAAGAACCTCCCAAGGCAAAGGAAAAGCCTGTCACCGGAGCAAGAAGCCTGAGGAGAAGCAACAAGAACCTCAACAGTAACAACTCTGGCAATAAGAAACTCGCAACTAACACTACTTCCAAAGCAGCAGGGTCCTCAGCAAACAAGCCTGCTGAGACCCCTAAACTGGAGAAGAGCAAAGCAGAGGCGAGCACCGAAAAGAGGAATGCAGCTGCAGATTTCTTGAAACGGATAAAGCAAAATGCTCCAGCGGAGGGGCTAAAGAGTGGTGGTGGAAGTAGTAGCAGCAGCAGGGGTGGTGCTGGTGGGAAAGAGCAGAAGAAAATAGTGAATAAGGGAAAGGTGGATAAAGGGAAAGAAAGGAATCCTAGGCAAAACAACAATGGAGGAGGGTCAGGGGATAAAAGGAATAAGAATATTGAGTCAAAAAGGAGTGTTGGAAGGCCTCCAAAGAAGGCAACAGAGACCAATGCAGGTTCTGCAAAGCGTGGGAGGGACAATACTGCTAATGCTAGTGCTAGCAAAGATAAACGACCCAATAAGCGTTCTAAGAAATGA 2175 0.4924 MENQQNQNPTLEEEQNQVWGTWEELLLACAVNRHGFKDWDTVAMEVQSRTTLFATARHCEQKFHDLNRRFADQCNDDDMTLRRNGADAGDGADHVPWVDELRKQRVDELRREVQHYDVSILSLQLKVKRLEEEREKENCRKEDEKPDLDVSVKKLPENEKTGEERDEPEPVSSEPEPVSSEPDIRRLDESTTNTDKVLPTTADESDRENQSVNESNSTGSRFEGGKSKDGDVMMLENGLDSEPGPVHDGLTEPVQTERKEKPVGEESNNGSCDTVAKVLTCESVPPSEERGKVAEDDDSSELRDSVAHSGGTRESSEVQSSASLTRKRNMRRRKEVYGGDGSGEVTAVVRSESLVGLLELIRRHEHSSLFERRLDSQESDEYKNTVRRHMDLKTIQLRLQNGNYSSRTSEFFSDLLLIFSNAIVFFPKDSRESQVAQQLRHLVSAELKNQCPSQSDPITQKTDSQSPNAPQAKPDSLLSQQKAAAPIVVCRKRSSISAKPSSATIGQKDEQPIINDKEKPISATKPPLKTSSDTDEEEEEEPPKAKEKPVTGARSLRRSNKNLNSNNSGNKKLATNTTSKAAGSSANKPAETPKLEKSKAEASTEKRNAAADFLKRIKQNAPAEGLKSGGGSSSSSRGGAGGKEQKKIVNKGKVDKGKERNPRQNNNGGGSGDKRNKNIESKRSVGRPPKKATETNAGSAKRGRDNTANASASKDKRPNKRSKK 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0603 724 MobiDBLite consensus disorder prediction 555 586 - -
Lal20g0603 724 SMART sant 15 69 IPR001005 -
Lal20g0603 724 MobiDBLite consensus disorder prediction 311 325 - -
Lal20g0603 724 MobiDBLite consensus disorder prediction 288 310 - -
Lal20g0603 724 MobiDBLite consensus disorder prediction 592 613 - -
Lal20g0603 724 CDD SANT 19 50 IPR001005 -
Lal20g0603 724 PANTHER BNAC04G22430D PROTEIN 12 724 - -
Lal20g0603 724 MobiDBLite consensus disorder prediction 131 172 - -
Lal20g0603 724 Pfam Myb-like DNA-binding domain 18 63 IPR001005 -
Lal20g0603 724 MobiDBLite consensus disorder prediction 644 662 - -
Lal20g0603 724 SMART bromo_6 343 452 IPR001487 GO:0005515
Lal20g0603 724 MobiDBLite consensus disorder prediction 675 689 - -
Lal20g0603 724 MobiDBLite consensus disorder prediction 447 478 - -
Lal20g0603 724 ProSiteProfiles Bromodomain profile. 362 433 IPR001487 GO:0005515
Lal20g0603 724 PANTHER BROMODOMAIN-CONTAINING PROTEIN 8 12 724 - -
Lal20g0603 724 Pfam Bromodomain 358 437 IPR001487 GO:0005515
Lal20g0603 724 MobiDBLite consensus disorder prediction 131 342 - -
Lal20g0603 724 Gene3D - 345 456 IPR036427 GO:0005515
Lal20g0603 724 SUPERFAMILY Bromodomain 350 452 IPR036427 GO:0005515
Lal20g0603 724 MobiDBLite consensus disorder prediction 626 640 - -
Lal20g0603 724 MobiDBLite consensus disorder prediction 252 266 - -
Lal20g0603 724 Coils Coil 120 140 - -
Lal20g0603 724 ProSitePatterns Bromodomain signature. 367 425 IPR018359 -
Lal20g0603 724 CDD Bromodomain 357 447 - -
Lal20g0603 724 MobiDBLite consensus disorder prediction 496 724 - -
Lal20g0603 724 SUPERFAMILY Homeodomain-like 15 66 IPR009057 -
Lal20g0603 724 MobiDBLite consensus disorder prediction 447 480 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lal20g0603 Bromodomain 6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0603 - - adu:107458545 827.394