Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0598 ATGGAACTTGGTTTGAGTTTAGGAGATTCTTCAACACCCTTTGTTGGGTTCATTGAAAAACCTATTGAAGTTTCAAATCAACATGGGTTAGGCTTCAACACTACCTTATCAATTGGTCCAATCATTACTACACAAAGAGATCAACAGGAACAAGAACAAGAACAAGAACAATTTGAAACAAAACCAAACAACAATAGTATTAGTGTTTGTAGTGTATCTCCCAAGAATAATAATGTCATGCATCAACTTGATCTTCTTCCAAGGCTCTCTCTTCCATGGCTCCCTCCTTCTCAAGATGCTGAGTTAGGAGGTTGTTCTAGAAGCTTCGATGTAAACACCCTGCCGGCGGCGGCAGCGGAGGATGAGGTGGAGGAAGGGGTGGCGCTATCGTCGTCCCCCAACAGTGCAGCATCGCCTTTTCAGATGGATCTTTCCATATACAACGCAAGAGGAGGGAGTTTGAGTGGTTCCGGAGGGAACTGTTATTACAACGGTGGTGGTGGTGGCGGTGGCGGCGATAGTGGCGGCAAGAGGGACTCTGATGATGGTGATGAAGATGACAACGTTGGTGGTAGCTCTAGGAAGAAACTCAGACTCTCAAAGGAACAATCAGCTTTCCTTGAAGATAGTTTCAAAGAGCATAGCACTCTTAACCCCAAACAAAAGCTTGCTCTTGCTAAACAACTAAATCTTCGTCCTCGCCAAGTTGAAGTATGGTTTCAAAACAGAAGGGCAAGAACCAAGTTGAAGCAAACAGAGATGGATTGTGAGTACTTGAAAAGGTGTTGTGAGACACTAACTGAAGAGAATAGAAGACTTCACAAGGAGCTTCAAGAATTAAGGGCTTTGAAGACTTCAAAACCATTCTACATGCAATTACCAGCAACTACCTTAACTATGTGCCCTTCTTGTGAAAGGGTAGCCACTAATTCTACATATACTTCCTCTGCTACTCCTTCTAGTGCCACCAACAATGCTAATTCAGGGGCAATGGTCACTTCCAAAACTAGTAATGATTCCAAAGTTATTGGATTTCCTCTTGGCAAACCCATGTTTCAATCATTTTCTGCTAAACCCCATACACACGAATAG 1092 0.4313 MELGLSLGDSSTPFVGFIEKPIEVSNQHGLGFNTTLSIGPIITTQRDQQEQEQEQEQFETKPNNNSISVCSVSPKNNNVMHQLDLLPRLSLPWLPPSQDAELGGCSRSFDVNTLPAAAAEDEVEEGVALSSSPNSAASPFQMDLSIYNARGGSLSGSGGNCYYNGGGGGGGGDSGGKRDSDDGDEDDNVGGSSRKKLRLSKEQSAFLEDSFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEMDCEYLKRCCETLTEENRRLHKELQELRALKTSKPFYMQLPATTLTMCPSCERVATNSTYTSSATPSSATNNANSGAMVTSKTSNDSKVIGFPLGKPMFQSFSAKPHTHE 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0598 363 Coils Coil 263 286 - -
Lal20g0598 363 CDD homeodomain 194 251 IPR001356 GO:0003677
Lal20g0598 363 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 5 328 - -
Lal20g0598 363 MobiDBLite consensus disorder prediction 312 337 - -
Lal20g0598 363 Pfam Homeodomain 194 248 IPR001356 GO:0003677
Lal20g0598 363 MobiDBLite consensus disorder prediction 175 198 - -
Lal20g0598 363 ProSiteProfiles 'Homeobox' domain profile. 190 250 IPR001356 GO:0003677
Lal20g0598 363 ProSitePatterns 'Homeobox' domain signature. 225 248 IPR017970 GO:0000981|GO:0006355
Lal20g0598 363 PANTHER - 5 328 - -
Lal20g0598 363 SUPERFAMILY Homeodomain-like 180 251 IPR009057 -
Lal20g0598 363 SMART HOX_1 192 254 IPR001356 GO:0003677
Lal20g0598 363 Pfam Homeobox associated leucine zipper 250 284 IPR003106 GO:0006355|GO:0043565
Lal20g0598 363 SMART halz 250 293 IPR003106 GO:0006355|GO:0043565
Lal20g0598 363 MobiDBLite consensus disorder prediction 170 198 - -
Lal20g0598 363 Gene3D - 198 248 - -
Lal20g0598 363 MobiDBLite consensus disorder prediction 44 66 - -
Lal20g0598 363 CDD bZIP 243 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0598 Lal-Chr20 5291284 5293775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0598 184 307 Homeobox Transcription Factor Family AT4G37790 79.839 1.21e-68 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal20g0598 Homeodomain 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0598 K09338 - gmx:100778742 402.519