Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0584 ATGGATACGGCGGCGGAGGAAGAATTAAAAACATTCTGGTGCCACGACTGCGACATGAGCGTGGCTCTCACGTTCTCTTCATCTTCATCACCTCTTCTCTGTCCTTATTGTAACACCAACTTCCTTGAACTCATTGATTCCCCATTCCACCAAAACGACGCCGTTTCACCACTCTCAATCTTCAGCTCCCCATTTCTCCACAGCCTCATCTTCACCAATAACCCGAACGTCACCGTTTTTGAGAACGACGACTTCGGTGAAGACCTACTCGCTTTAGTAACGTCACAGCCACGCGCCACAGACACTGTAACTGTAATCGCTGTAACTGATTCTCTTCTCTTGAATCTTGACCCAAACGGCGTCGTTTTATGCGCCGTATGCAAAGATGAAATCGCCGTGAACGATAAAGCTAAGATTCTTCCTTGTAACCACTTGTACCATTGTGATTGCATAACGCCATGGCTTTTGAATCATGATTCGTGTCCGATATGTCGGTTTCGGATTGTGGAGGGGGGAAATCATGGAGACGGTGGTGGTGGCGGTGGTGGTGTGAGGAGTAGGGATATGAGGAGGCATTTGAGGGAAGCGATGACGAGGCTTTCCGAGTTGATGGAAGAAGAAGAGGAAGATTTCTATGGATTGAGAACTAGTCTGAATCACATTGCTTATAGGCATGGGATTCTTCATGAAGATTCTGATGGTTCTGGTGTGAGTGAGTCCATGATTGCATATGGTGGTAGTGGAGATGAACAATTACCATGA 762 0.4685 MDTAAEEELKTFWCHDCDMSVALTFSSSSSPLLCPYCNTNFLELIDSPFHQNDAVSPLSIFSSPFLHSLIFTNNPNVTVFENDDFGEDLLALVTSQPRATDTVTVIAVTDSLLLNLDPNGVVLCAVCKDEIAVNDKAKILPCNHLYHCDCITPWLLNHDSCPICRFRIVEGGNHGDGGGGGGGVRSRDMRRHLREAMTRLSELMEEEEEDFYGLRTSLNHIAYRHGILHEDSDGSGVSESMIAYGGSGDEQLP 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0584 253 Coils Coil 186 210 - -
Lal20g0584 253 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 62 172 - -
Lal20g0584 253 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 1 49 - -
Lal20g0584 253 Pfam Ring finger domain 124 165 IPR001841 -
Lal20g0584 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 176 IPR013083 -
Lal20g0584 253 Pfam zinc-ribbon 11 45 IPR039525 GO:0061630
Lal20g0584 253 SMART ring_2 124 164 IPR001841 -
Lal20g0584 253 ProSiteProfiles Zinc finger RING-type profile. 124 165 IPR001841 -
Lal20g0584 253 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 49 - -
Lal20g0584 253 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 62 172 - -
Lal20g0584 253 SUPERFAMILY RING/U-box 83 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0584 Lal-Chr20 5159824 5160585 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0584 5 214 C3H Transcription Factor Family AT3G60080 30.159 2.86e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0584 K11982 - gmx:100775530 191.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0584 20 5159824 5160585 Lal20g0584 20 5159824 5160585 ECH