Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0546 ATGGGAACACCAGTGAATATCATTGTTGGATCACAGGTTTGGGTTGAAGATCCTGAGATTGCATGGATCCATGGTGAAGTTACAGAAATCAATGGCAAAAAAGTAAAAATCATAACCACAGATGGAAAAAGTGTGGTCAAAGAAATTTCAAGTATATATCCTAAAGATACAGAAGCACCCCCTGCAGGGGTTGATGATATGACCAAACTAGCATATCTACATGAGCCAGGAGTCCTATATAATCTCGCTTGTCGTTTTTCTCTTAATGAGATATATACATATACGGGAAATATCTTAATTGCGGTGAATCCGTTTCGAAGATTGCCACACTTGTATGACATCCATATGATGGAGCAGTACAAAGGTGCAGCATTTGGAGAGTTAAGTCCTCACCTTTTTGCTGTTGCAGACACATGTTACAGGGCGATGATAAACGAAAATGGAAGTCAGTCCATATTGGTAAGTGGAGAGAGTGGAGCTGGTAAAACAGAAACAACCAAAATGCTAATGAGATATCTAGCATTCATGGGAGGAAGATCTAATACAGAAGGAAGAACGGTAGAGCAACAAGTTTTGGAGTCCAATCCTGTGCTGGAAGCATTTGGAAATGCCAAAACTGTTAAAAACAACAATTCAAGTCGTTTTGGTAAGTTTGTTGAAATTCAATTTGACAAGAATGGGAAGATTTCTGGAGCTGCAATCCGTACATACCTGCTCGAAAGGTCACGAGTTTGCCAGGTCTCTGACCCGGAGAGAAACTATCATTGCTTTTACATGCTTTGTGCAGCACCACCAGAGGATCTTAAGAAGTACAAGTTAGGGGATCCAAGACAATTCCACTATCTTAATCAATCAAACTGTTATAAAGTATCAAATGTCGATGATGCAAAAGAATACATGGAGACGAGAAATGCAATGGATATTGTAGGCATCAATCAAGATGAGCAGGATGCGATCTTTCGTGTGGTAGCCGCAATCCTCCACCTTGGGAACGTTAACTTTATCAAAGGGAAAGAATTTGATTCGTCGAAATTAAAAGATGACAAATCGCTCGTCCACCTTCGAATAGTTGCAGAGTTACTCATGTGTGATGAGAAATCACTACAGGATTCACTTTGTCAGCGTGTCATTGTTACTCCCGATGGTAACATTACGAAACCACTAGACCCGGATGCAGCTGCTTTGAGCCGAGATGCTTTGGCGAAGACTGTGTACTCCAGACTGTTTGATTGGATTGTGGACAAGATCAACAGTTCAATTGGTCAAGATTCCAATGCAGTAAGCATAATAGGAGTCCTTGACATTTACGGATTTGAGAGCTTCAAAATAAACAGTTTCGAGCAACTATGCATCAACCTAACAAATGAGAAGTTGCAACAACATTTCAATCAGGCAAGGCTACAACTTCTAAATATACATGTATTCAAGATGGAGCAAGAAGAGTACACAAAGGAGGAAATAAATTGGAGCTACGTCGAATTCGTGGATAACCAGGATGTTCTTGATCTTATTGAGAAGAAACCCGGAGGAATAATTGCTCTTCTCGATGAAGCCTGCATGTTCCCGAAGTCAACTCATGAGACTTTTGCACAAAAGATGTACCAGACATATAAGGCACATAAGCGCTTCAAAAAGCCAAAACTTGCTCGAACAGATTTCACAATTAACCATTATGCTGGAGATGTCACATACCAAGCGGAATATTTTCTCGATAAAAATAAAGATTATGTTGTCGCAGAACATCAAGCTCTTTTATGGGCCTCCAAGTGCAATTTTGTTGCTAATCTTTTCCCTCCTTTGCCCGAGGAGACATCGAAGCAGTCAAAATTCTCTTCCATTGGTGCACAGTTTAAGCAACAATTGCAATCTCTCATGGAAATTCTAAGCACAACTGAACCACATTACATAAGATGTGTGAAACCAAATACAGTTCTGCAGCCAGGAATCTTTGAGAACTACAATGTCTTAAACCAGTTAAGATGTGGGGGAGTACTTGAGGCAATAAGGATTAGTTGTGCAGGATATCCAACAAAAAGAACATTTGAAGAATTTCTCGATCGTTTTGGAATGCTAGCCCCTAGTGTCCTTGATGGATCCGATGAGAAAACGGCATCTATTGCAATATGCGATGAGATGGGCTTAAAAGGCTATCAAATGGGAAAAACTAAGGTATTTCTTAGAGCTGGTCAGATGGCTGAATTAGATGCCCGACGAGCCGAAGTTTTAGCTAAAGCAGCTAGACGCATACAGAGAAAAATCCGAACACATTTAACTAGGAAAGAGTTCATTACCCTGAGAAAGGCCACAATTCATATCCAGAAAACTTGGAGAGCAAAACTTGCACGTAAAGTCTACGGAGACATGAGAAGGGAAGCAGCTTCTATCCGGATACAGAAATATGTGCGTGCACATAGAGCAAGAATGTATTATACATCATTACAAGCATCAACTATAGTTATTCAATCAGGGTTGCGAGCATTAGCAGCACGAAATGAATACAGCCATAGAAAAAGAACAAAGGCTTCAATCAAAGTTCAGACACAATGGAGAAGAGCCTTAGCTCTTTTTGATTACAAACAACAGAAGAAAGCAACTATTACACTTCAATGTCTCTGGAGAGCTAAAGTAGCAAAGAAAGAGCTCAGAAAGCTTCGGATGGCTGCGAGGGACGCTGGGGCACTTAAGGAAGCAAAGGACAAGTTGGAGAAGCGCGTTGAGGAGCTTACATGGAGACTAGATATAGAAAAGCACATGAGGGTTGACCTTGAAGAAACTAAAGGTCAAGAGATTGCAAAACTACAAAATGCTTTACTAGAAATGCAAGCTCAGCTAGATGAAGCACATGCTGCAATTATACATGAGAAAGAAGCAGCAATATTAGCAATTGAACAAGCTCCACCAGTAATTAAAGAGGTGCATGTTGTGGATAACACTAAGCTAGAGTTACTGACAAATAAAAATGAGGAGTTGGAGAGTGAAGTAGAAGAGCTAATGAAGAAGATTGAAGTGTTTGAAGTAAGGTTCCTAGAAATTGAAAATGAGAATCAATCAAGGCTGAAAGAGGCAGAAGAAGCACAGCTCAAAGCAATGCAACTTCAGGAGACTATTGAAAGATTAGAATCGAGTTTGTCGAACCTTGAGTCGGAGAATCAGGTTCTATGCCAGAAGGCTTTGGAAGAATCAAAGAATGAAGAGCTTTCTGAAGAGATCAAAGTCCTCAAGGATCAGATAGAAAATCTAGAATCGAAGAATGAATTTCTCCGGTGCGAGGCAGCAGCAGCTGCTTCTATAGAGCAGAAAGTTCATCCGGAGAAAATAGCAACAGATCAAGTCCAGGAAGTTGTTCCTTTAGAGCAGATTCAACAGAGAGTTATTTCAGATAATATGACTGCACAAATAAAGAATTTGGATAATGGAAATCAAACACAGAAAGAACTCCATGCAAGAAAAGAACCAAGAGCACCTGTCTCATTTCTTGCAAAACAAAGATCACTCACAGACAGACAGCAGGAAAGTTATGATATACTTCTCAAGTGTCTCACGGAAGATAAGCGATTCGAGAAAAACAGACCAGCAGTTGCATGTATTGTTTATAAAGCACTTCTTCATTGGCGATCCTTTGAAGCCGAGAAGACACATATATTTGATAAGATTATTCACGCCATCCGATTATCTATAGAGAGTCAAGAAGGAATCAATAATCTAGCATATTGGTTGTCAACAACTTCAACACTTCTGTTCTATCTACAATGCACACTCAAAGCTAGCAATTCAACTAGGGCAGTGTCACGTAATAGAAACTCCCCTGCCACTCTATTCGGCAAAATGGCACAAGGTTTACGTTCAACTTCAACGGGCACGGGGTTTTCAAGCGGCTATGGTGGAATAGTGGACAAGCCAAATGAGAAATCGAAAGTGGACGCTAAGTACCCAGCTATTCTGTTTAAGCAACATTTAACTGCATATGTTGAGAAGATATATGGAATGATCCATGATAGTCTAAAGAAAGAGATTAGTCCATTCCTGAATTTGTGTATTCAGGCACCAAGATCTATAAGAACCCGATCAATAAGAGGGTCATCCAGAAACATTCATTCAAATATAGTTGCGAAACAACAGGCATTGCATATGCACTGGAAAAGTATTGTCACCAAGTTAGATCATGCATTGAGTATATTATCAGATAACTATGTCCCTTCCATCATCACAAGGAAAATATTTAGTCAAGTTTTCTCATTCATGAATGTCCAAATCTTTAATAGTTTGTTGCTTCGCCGTGAGTGTTGCTCTTTTAGCAATGGAGAATATTTGAAGGCAGGTTTGCATGAGTTGGAACTATGGTGTCTTAAGGCAACAGATCAGTTTGCTGGATCATCTTGGTGTGATCTCAAACACATACGCCAAGCTGTTGGTTTTCTGGTTTTACATCAGAAGGCTCAAAAATCTTTGGAGGAAATCACAAATGAACTTTGCCCGGTGCTAAGTATTCCACAAATATATCGGATTGGAACTATGTTCTGGGATGACAAATATGGTGCACAAGGATTATCTCAAGAAGTCATTAGCAGAATGAGAGTGCTTATGACAGAAGACTCAATAAACATACTCAGTAACTCATTCCTTCTAGAAGTAGACTCCAGCATACCTTTCTTGATGGAGGAGATTTTTCGGTCAATGAGTGACATATCTATATCAGATATGGATGTGGATCCACCCTCAATTCTAAGGCAAAGGTCTGATTTTCAATTCTTGCTGCAACAAATAGACAGTGATTCTCATTGA 4782 0.398 MGTPVNIIVGSQVWVEDPEIAWIHGEVTEINGKKVKIITTDGKSVVKEISSIYPKDTEAPPAGVDDMTKLAYLHEPGVLYNLACRFSLNEIYTYTGNILIAVNPFRRLPHLYDIHMMEQYKGAAFGELSPHLFAVADTCYRAMINENGSQSILVSGESGAGKTETTKMLMRYLAFMGGRSNTEGRTVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVEIQFDKNGKISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEDLKKYKLGDPRQFHYLNQSNCYKVSNVDDAKEYMETRNAMDIVGINQDEQDAIFRVVAAILHLGNVNFIKGKEFDSSKLKDDKSLVHLRIVAELLMCDEKSLQDSLCQRVIVTPDGNITKPLDPDAAALSRDALAKTVYSRLFDWIVDKINSSIGQDSNAVSIIGVLDIYGFESFKINSFEQLCINLTNEKLQQHFNQARLQLLNIHVFKMEQEEYTKEEINWSYVEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKMYQTYKAHKRFKKPKLARTDFTINHYAGDVTYQAEYFLDKNKDYVVAEHQALLWASKCNFVANLFPPLPEETSKQSKFSSIGAQFKQQLQSLMEILSTTEPHYIRCVKPNTVLQPGIFENYNVLNQLRCGGVLEAIRISCAGYPTKRTFEEFLDRFGMLAPSVLDGSDEKTASIAICDEMGLKGYQMGKTKVFLRAGQMAELDARRAEVLAKAARRIQRKIRTHLTRKEFITLRKATIHIQKTWRAKLARKVYGDMRREAASIRIQKYVRAHRARMYYTSLQASTIVIQSGLRALAARNEYSHRKRTKASIKVQTQWRRALALFDYKQQKKATITLQCLWRAKVAKKELRKLRMAARDAGALKEAKDKLEKRVEELTWRLDIEKHMRVDLEETKGQEIAKLQNALLEMQAQLDEAHAAIIHEKEAAILAIEQAPPVIKEVHVVDNTKLELLTNKNEELESEVEELMKKIEVFEVRFLEIENENQSRLKEAEEAQLKAMQLQETIERLESSLSNLESENQVLCQKALEESKNEELSEEIKVLKDQIENLESKNEFLRCEAAAAASIEQKVHPEKIATDQVQEVVPLEQIQQRVISDNMTAQIKNLDNGNQTQKELHARKEPRAPVSFLAKQRSLTDRQQESYDILLKCLTEDKRFEKNRPAVACIVYKALLHWRSFEAEKTHIFDKIIHAIRLSIESQEGINNLAYWLSTTSTLLFYLQCTLKASNSTRAVSRNRNSPATLFGKMAQGLRSTSTGTGFSSGYGGIVDKPNEKSKVDAKYPAILFKQHLTAYVEKIYGMIHDSLKKEISPFLNLCIQAPRSIRTRSIRGSSRNIHSNIVAKQQALHMHWKSIVTKLDHALSILSDNYVPSIITRKIFSQVFSFMNVQIFNSLLLRRECCSFSNGEYLKAGLHELELWCLKATDQFAGSSWCDLKHIRQAVGFLVLHQKAQKSLEEITNELCPVLSIPQIYRIGTMFWDDKYGAQGLSQEVISRMRVLMTEDSINILSNSFLLEVDSSIPFLMEEIFRSMSDISISDMDVDPPSILRQRSDFQFLLQQIDSDSH 1593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0546 1593 ProSiteProfiles IQ motif profile. 790 817 IPR000048 GO:0005515
Lal20g0546 1593 Gene3D - 675 737 - -
Lal20g0546 1593 Coils Coil 884 918 - -
Lal20g0546 1593 Gene3D - 439 631 - -
Lal20g0546 1593 CDD MyosinXI_CBD 1167 1553 IPR037975 GO:0007015
Lal20g0546 1593 ProSiteProfiles IQ motif profile. 742 769 IPR000048 GO:0005515
Lal20g0546 1593 Gene3D Kinesin motor domain 65 670 IPR036961 -
Lal20g0546 1593 Coils Coil 980 1097 - -
Lal20g0546 1593 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lal20g0546 1593 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lal20g0546 1593 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lal20g0546 1593 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lal20g0546 1593 PRINTS Myosin heavy chain signature 490 518 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lal20g0546 1593 PANTHER MYOSIN 1059 1583 - -
Lal20g0546 1593 PANTHER MYOSIN 20 1057 - -
Lal20g0546 1593 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Lal20g0546 1593 ProSiteProfiles IQ motif profile. 861 890 IPR000048 GO:0005515
Lal20g0546 1593 ProSiteProfiles IQ motif profile. 765 794 IPR000048 GO:0005515
Lal20g0546 1593 SMART DIL_2 1405 1512 IPR002710 -
Lal20g0546 1593 Pfam Myosin head (motor domain) 64 727 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lal20g0546 1593 Gene3D Myosin VI head, motor domain, U50 subdomain 312 609 - -
Lal20g0546 1593 Coils Coil 930 950 - -
Lal20g0546 1593 CDD MYSc_Myo11 76 727 IPR036018 -
Lal20g0546 1593 Gene3D - 252 310 - -
Lal20g0546 1593 SMART MYSc_2a 56 740 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lal20g0546 1593 SMART iq_5 812 834 IPR000048 GO:0005515
Lal20g0546 1593 SMART iq_5 789 811 IPR000048 GO:0005515
Lal20g0546 1593 SMART iq_5 837 859 IPR000048 GO:0005515
Lal20g0546 1593 SMART iq_5 764 786 IPR000048 GO:0005515
Lal20g0546 1593 SMART iq_5 860 882 IPR000048 GO:0005515
Lal20g0546 1593 SMART iq_5 741 763 IPR000048 GO:0005515
Lal20g0546 1593 PANTHER MYOSIN-12 20 1057 - -
Lal20g0546 1593 PANTHER MYOSIN-12 1059 1583 - -
Lal20g0546 1593 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 793 889 IPR027417 -
Lal20g0546 1593 Gene3D - 792 839 - -
Lal20g0546 1593 Gene3D - 840 889 - -
Lal20g0546 1593 Gene3D - 740 791 - -
Lal20g0546 1593 Pfam IQ calmodulin-binding motif 792 810 IPR000048 GO:0005515
Lal20g0546 1593 Pfam IQ calmodulin-binding motif 863 882 IPR000048 GO:0005515
Lal20g0546 1593 Pfam IQ calmodulin-binding motif 766 785 IPR000048 GO:0005515
Lal20g0546 1593 Pfam IQ calmodulin-binding motif 744 762 IPR000048 GO:0005515
Lal20g0546 1593 Pfam Myosin N-terminal SH3-like domain 10 45 IPR004009 GO:0003774|GO:0005524|GO:0016459
Lal20g0546 1593 ProSiteProfiles Myosin motor domain profile. 62 739 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lal20g0546 1593 ProSiteProfiles Dilute domain profile. 1216 1530 IPR002710 -
Lal20g0546 1593 ProSiteProfiles IQ motif profile. 813 842 IPR000048 GO:0005515
Lal20g0546 1593 Pfam DIL domain 1406 1509 IPR002710 -
Lal20g0546 1593 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 792 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0546 Lal-Chr20 4800595 4811942 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0546 116 1588 Myosins gene family AT2G31900 71.458 0.0 2176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0546 20 4800595 4811942 Lal20g0546 20 4800595 4811942 ECH