Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0544 ATGATGCAAGGTAGTGGAGAATTAACAGTTCCTCCGGGCTTCAGGTTTCACCCAACTGATGAAGAGCTTCTATACTATTACCTGAGGAAGAAAGTTTCTTATGAAGCCATTGACCTTGATGTCATAAGAGAAGTGGATCTGAACAGGCTTGAGCCTTGGGACCTGAAAGATAAATGTAGGATTGGGTCAGGACCTCAGAATGAGTGGTATTTCTTCAGCCACAAGGATAAGAAATATCCAACAGGAACTCGAACAAATAGAGCAACAACAGCTGGATTTTGGAAAGCAACTGGAAGAGACAAAGCCATTTACCATAGCAATTCTAAGAGGATTGGGATGAGGAAAACCTTAGTATTCTACACTGGTCGTGCTCCTCATGGCCACAAAACTGAGTGGATCATGCATGAGTATCGTCTTGAAGAAGATGATGTTGAGGTTCAGGAAGATGGGTGGGTTGTTTGCAGGGTTTTCAAAAAGAAAAACCAAAATAGAAGTTACCAACAAGAAATTGAAGAAGAAGATCAGCACTTCACTCACATGATGAGAACAACTGGTCCTTCCCAAATTCTAGAGCCAAAAAATCATCACATGCAAGGACTCTATGATTACAATAACTTTGATGGGTCACTACACTTGCCACATTTGTTCAGTCCAGAATCAACTATAGCACCAACTCCTTCCATGGCTTCTTCATCCATGAATGCCATGAACATCCTTGAATGCTCTCAAAACTTGTTGAGGCTTACAACAAGTGATGGATGTGGACTTAATCTTATGCAACAACAAGGAGAGAGGTTCAATGGTGATTGGTCATTCTTGGATAAGCTCTTAGCATCACACAATAATAACCCTCTTACCCATCAAGATGCAGCACCTTCTGTTGGAATTTCAGCTCAGAAATTTCCATTTCATTACCTTGGCTGTGACACTCATGATATTATGAAATTTTCCAAGTAG 957 0.4075 MMQGSGELTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNRLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYHSNSKRIGMRKTLVFYTGRAPHGHKTEWIMHEYRLEEDDVEVQEDGWVVCRVFKKKNQNRSYQQEIEEEDQHFTHMMRTTGPSQILEPKNHHMQGLYDYNNFDGSLHLPHLFSPESTIAPTPSMASSSMNAMNILECSQNLLRLTTSDGCGLNLMQQQGERFNGDWSFLDKLLASHNNNPLTHQDAAPSVGISAQKFPFHYLGCDTHDIMKFSK 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0544 318 Pfam No apical meristem (NAM) protein 11 139 IPR003441 GO:0003677|GO:0006355
Lal20g0544 318 Gene3D NAC domain 19 164 IPR036093 GO:0003677|GO:0006355
Lal20g0544 318 ProSiteProfiles NAC domain profile. 10 159 IPR003441 GO:0003677|GO:0006355
Lal20g0544 318 PANTHER PROTEIN SOMBRERO 6 286 - -
Lal20g0544 318 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 6 286 - -
Lal20g0544 318 SUPERFAMILY NAC domain 5 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0544 Lal-Chr20 4763500 4767332 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0544 2 318 NAC Transcription Factor Family AT1G79580 53.175 1.52e-115 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lal20g0544 NAM 9.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0544 - - gmx:100789606 521.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0544 20 4763500 4767332 Lal20g0544 20 4763500 4767332 ECH