Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0538 ATGATTTTGTATACTCAACAATCACACTCACTTTTCACCATTTCCTCTACCTATAATTACAACCTTTCATTCCATAACCATGTCCAACTTCTTCATCTTCGTTTTCCATTTTCACAAGTGCCTATTTGCAAAGGAAAGCTTCTCAGAAAGAGAAACTGGACCAAGTCTTTCTCTTCCTCTGCAACAACACCAGTTCCTTTGCCACCAGACCCAGATAAGCAACAGCAGCAAGTGGAAGAAGAAAGTAACGGTGTTGTTGCACCGGGCACCAGTCTTGATCTGCAAACACTTTTTAGAAGGTTCTGGAAGGTAGCAGCTCCTTATTGGAGTTCAAATGACAAGGTCCAAGCTAGGTTGCAGCTTGCTGGTGTTTTTGCTCTCACTTTGGCTACTACTGGAATCAGTGTTGGCTTTAATTTCCTGGGGAGAGACTTCTATAACGCACTTGCCAACAAGGACCAAGAACAATTCACAACACAACTACTTTACTACTTGGGTGCCTTTGCTGGAGGAATCCCGTTTTTTGTATTGAGAGATTATGCAAGAGAAACTCTTTCTTTGAGATGGAGGTCTTGGATGACCAGCTATTACATGGATCGATATCTTAAGGATCAAACTTTCTATAAAATTCAGTCACAATCAATCATTGATAATCCAGACCAGCGAATTGTTGATGATCTAAGTTCTTTCACTGGAACAGCCCTTTCTTTCTCTCTGACATTCTTTAATGCTGCTGTAGACTTAATCTCATTCAGTAATATCTTATATGGAATCTATCCTCCTCTATTTATTGTTCTTCTTGTATACTCCATTGGTGGGACAGCTATCAGTGTTTTCCTTGGAAGGGGATTGGTGAATTTAAATTTCTTGCAAGAGAAAAAAGAAGCAGACTTTCGTTATGGACTTGTACGGGTTCGGGAAAATGCTGAATCCATAGCTTTCTACAGTGGCGAAGAAAGCGAAATGCAACTTCTTCTTCAGCGCTTCAGAAGCGCTTTTGAAAATCTGAGTCAACTGTTGATCTCTTCTCGAAATCTGGATTTCTTTACGAGTGGCTACCGTTATGCCATTCAAATTCTTCCTGCTGCTGTTGTTGCTCCTATGTACTTCTCTGGAAAAATTGAGTTTGGTGTCATTAATCAGTCAGTCTCAGCTTTTAATCATATCCTTGGTGACTTTTCCCTCATTGTGTATCAGTTTCAAGCAATAAGTGCTTTTTCTGCTGTTATTAATCGGCTAGGTGAATTTGATGATGTTTTGGACAGAAGCAGCTCTAAATCTCTCTCCGGTACTATAGAAGATATTCATGTCTCGTACAAAGATTTTAGGAGTTCATCTGTATTGGAATCTAATGGATCCATCCCACCAGAAAAATATGAGACTTTACTAGAGATCGAAAATTTGACTCTGAAGACACCAAGTGAATCTACACTTATTAGGAACTTGTCGTTGATGATCAAGGAAAAGGATCATTTACTGGTGATGGGACCAAGTGGAAGTGGTAAGACTTCTCTGTTAAGAGCTATGGCTGGTCTATGGAAAACTGGAACCGGAAAAATTACATACTATTTAAAAGATGGAAAAGATCCCGAGCAAGCCATTTTTTCGGATGCAAAAACTGCTCATGATACATCTGAGGAAAATGGAAAATCAATACGCAGAAACTCCAGAATTTTTTTCCTTCCTCAAAGGCCATATATGGTTTTGGGTACTCTTCGTCAACAATTACTTTACCCAACATGGGCCGACGAAACAGTTCCTGTATCAGATAGTACTAATCCGAAAAATAACCTTCCTTTCTTGGCAAACATGCCGAACTCGGATTACATGAAAGATAAGAATGTCAAGCCAACAACAGATGAGCTCATAAAGGTCTTAGACGATGTCCGCCTTGGCTATTTATTAGCTCGTTTCAGCTTAGATTCAACACATGAATGGTCTAGTGTTCTATCGCTGGGAGAGCAGCAACGGCTCGCATTTGCTCGGCTTTTGCTTTCGAAACCTCAGTTGGTATTACTGGATGAATCTACAAGTGCACTTGATGAAGCCAATGAGGTGAGTCTCGGCGTAACGGTTCATTTGTACCAGAGGATTGAAGCAGCAGGCATAACATACATCAGCATTGGCCATCGATCAACCTTGTGTGATTACCATGACACGATCTTACGCATATCCACAGTGGATGCTAACAATGAACAGCCAAATTGGTACATCGAACCTACTAATCGCGAATCCTCTCTAAAGTCGGCAAATCTATGA 2259 0.4046 MILYTQQSHSLFTISSTYNYNLSFHNHVQLLHLRFPFSQVPICKGKLLRKRNWTKSFSSSATTPVPLPPDPDKQQQQVEEESNGVVAPGTSLDLQTLFRRFWKVAAPYWSSNDKVQARLQLAGVFALTLATTGISVGFNFLGRDFYNALANKDQEQFTTQLLYYLGAFAGGIPFFVLRDYARETLSLRWRSWMTSYYMDRYLKDQTFYKIQSQSIIDNPDQRIVDDLSSFTGTALSFSLTFFNAAVDLISFSNILYGIYPPLFIVLLVYSIGGTAISVFLGRGLVNLNFLQEKKEADFRYGLVRVRENAESIAFYSGEESEMQLLLQRFRSAFENLSQLLISSRNLDFFTSGYRYAIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVINRLGEFDDVLDRSSSKSLSGTIEDIHVSYKDFRSSSVLESNGSIPPEKYETLLEIENLTLKTPSESTLIRNLSLMIKEKDHLLVMGPSGSGKTSLLRAMAGLWKTGTGKITYYLKDGKDPEQAIFSDAKTAHDTSEENGKSIRRNSRIFFLPQRPYMVLGTLRQQLLYPTWADETVPVSDSTNPKNNLPFLANMPNSDYMKDKNVKPTTDELIKVLDDVRLGYLLARFSLDSTHEWSSVLSLGEQQRLAFARLLLSKPQLVLLDESTSALDEANEVSLGVTVHLYQRIEAAGITYISIGHRSTLCDYHDTILRISTVDANNEQPNWYIEPTNRESSLKSANL 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0538 752 PANTHER ATP-BINDING CASSETTE SUB-FAMILY D MEMBER 3 75 739 - -
Lal20g0538 752 SMART AAA_5 488 735 IPR003593 -
Lal20g0538 752 Pfam ABC transporter 480 678 IPR003439 GO:0005524
Lal20g0538 752 Pfam ABC transporter transmembrane region 2 112 370 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal20g0538 752 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 463 751 IPR003439 GO:0005524
Lal20g0538 752 Gene3D - 456 733 IPR027417 -
Lal20g0538 752 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 122 405 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal20g0538 752 CDD ABCD_peroxisomal_ALDP 463 725 - -
Lal20g0538 752 ProSitePatterns ABC transporters family signature. 650 664 IPR017871 GO:0005524
Lal20g0538 752 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 456 724 IPR027417 -
Lal20g0538 752 SUPERFAMILY ABC transporter transmembrane region 100 416 IPR036640 GO:0005524|GO:0016021
Lal20g0538 752 Gene3D ABC transporter type 1, transmembrane domain 92 419 IPR036640 GO:0005524|GO:0016021
Lal20g0538 752 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 75 739 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0538 Lal-Chr20 4712430 4720495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0538 86 747 Acyl Lipid Metabolism Gene Families AT1G54350 69.265 0.0 904
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0538 - - lja:Lj3g3v0937780.2 1167.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0538 20 4712430 4720495 Lal20g0538 20 4712430 4720495 ECH