LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal20g0534	ATGACTGATTTTGTTATATGCTTGGGGCTAAAATGTATTAAAAACTGTCATTGGCTTCAATTCCACTCTTTTTCTCTGAATAATGTTTCCTTGTTTGCACATGTAGGAGATGAAATGACTCGAGTAATTTGGAAGTTGATAAAAGATAAGCTTATTTTCCCTTATTTGGAGCTGGATGTTAAGTATTTTGACCTTGGCCTTCCTCATCGGGATTCGACTAATGATAGAGTTACCATTGAAAGTGCTGAAGCTACACTCAAGTATAATGTTGCAATCAAATGTGCAACTATAACTCCAGATGAAGGTCGTGTCAAGGAGTTTGATTTAAAACAAATGTGGAAGAGCCCTAACGGGACAATCCGGAACATTTTAAATGGTACAGTTTTTAGAGAGCCGATTATCTGCAAAAACATTCCCCGGCTTGTTTCCGGCTGGACAAAGCCAATATGCATTGGAAGGCATGCTTTTGGAGACCAATATCGGGCAACCGATGCTGTTATAAAAGGCCCAGGAAAGCTAAAATTGGTGTTTGGTAAATTCACTATTCAGTCCACTACTTCTTATGACTCAAGTGCATTACACATTCAATCTCGACGAAGCTGCAAAATTGAGTTCTTACCCAATGGACATGAAGAAACTAAAGAGCTAGAGGTCTATAACTTCACTGGTGCTGGAGGCATAGCTTTGTCCATGTATAATACTGATGAGTCCATTCGAGCTTTCGCCGAGGCATCAATGAACATTGCTTACCAGAAAAGATGGCCTCTCTATCTTAGCACTAAAAATACCATTCTGAAAAAATATGATGGAAGATTCAAAGACATTTTTCAGGAAGTTTTTGACGCGCAATGGAGTCACAAGTTCAAAGATGCTGGGATATGGTACGAACACCGTCTCATAGATGATATGGTTGCCTATGCGGTTAAAAGCGATGGAGGTTATGTATGGGCCTGCAAGAATTATGATGGTGATGTGCAGAGTGATTTCTTAGCTCAAGGCTTTGGTTCTCTTGGATTGATGAGTTCAGTACTGGTTTGTCCAGATGGGAAAACTATTGAAGCAGAAGCAGCCCATGGCACTGTCACCCGTCATTATCGCGTTCATCAGATGGGAGGTGAAACCAGCACAAACAGTATAGCATCAATTTTCGCCTGGTCTCGAGGTCTCGCGCATCGGGCAAAGTTAGATGGAAATGCTAGACTGTTGGACTTTACTACGAAACTAGAAGAAGCTTGTGTTGGAACAGTTGAAATGGGAAAGATGACAAAGGATCTTGCACTTCTTGTTCATGGACCAAAGGTTTCTAGGTCCCAGTATTTGAATACTGAAGAGTTTATTGATGCTGTAGCTGAGGATCTTAGAACAAGACTATATACAAAAGCAAGGATGTAA	1392	0.4059	MTDFVICLGLKCIKNCHWLQFHSFSLNNVSLFAHVGDEMTRVIWKLIKDKLIFPYLELDVKYFDLGLPHRDSTNDRVTIESAEATLKYNVAIKCATITPDEGRVKEFDLKQMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTKPICIGRHAFGDQYRATDAVIKGPGKLKLVFGKFTIQSTTSYDSSALHIQSRRSCKIEFLPNGHEETKELEVYNFTGAGGIALSMYNTDESIRAFAEASMNIAYQKRWPLYLSTKNTILKKYDGRFKDIFQEVFDAQWSHKFKDAGIWYEHRLIDDMVAYAVKSDGGYVWACKNYDGDVQSDFLAQGFGSLGLMSSVLVCPDGKTIEAEAAHGTVTRHYRVHQMGGETSTNSIASIFAWSRGLAHRAKLDGNARLLDFTTKLEEACVGTVEMGKMTKDLALLVHGPKVSRSQYLNTEEFIDAVAEDLRTRLYTKARM	463

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal20g0534	463	Pfam	Isocitrate/isopropylmalate dehydrogenase	34	449	IPR024084	-
	Lal20g0534	463	Gene3D	Isopropylmalate Dehydrogenase	26	461	-	-
	Lal20g0534	463	SMART	Iso_dh_2	28	449	IPR024084	-
	Lal20g0534	463	PANTHER	ISOCITRATE DEHYDROGENASE [NADP]	188	462	-	-
	Lal20g0534	463	PANTHER	ISOCITRATE DEHYDROGENASE [NADP]	32	188	-	-
	Lal20g0534	463	PIRSF	IDH_NADP	183	460	IPR004790	GO:0004450\|GO:0006102
	Lal20g0534	463	PIRSF	IDH_NADP	25	187	IPR004790	GO:0004450\|GO:0006102
	Lal20g0534	463	TIGRFAM	nadp_idh_euk: isocitrate dehydrogenase, NADP-dependent	190	457	IPR004790	GO:0004450\|GO:0006102
	Lal20g0534	463	ProSitePatterns	Isocitrate and isopropylmalate dehydrogenases signature.	320	339	IPR019818	GO:0000287\|GO:0016616\|GO:0051287
	Lal20g0534	463	PANTHER	NADP-SPECIFIC ISOCITRATE DEHYDROGENASE	32	188	IPR004790	GO:0004450\|GO:0006102
	Lal20g0534	463	PANTHER	NADP-SPECIFIC ISOCITRATE DEHYDROGENASE	188	462	IPR004790	GO:0004450\|GO:0006102
	Lal20g0534	463	SUPERFAMILY	Isocitrate/Isopropylmalate dehydrogenase-like	35	452	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal20g0534	Lal-Chr20	4679933	4682836	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal20g0534	K00031		-	pop:7464575	709.909

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal20g0534	20	4679933	4682836	Lal20g0534	20	4679933	4682836	ECH