Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0533 ATGTCATCTTCAAAGCCTGTGAAGATGCCTGATTTACCTGAGATGGACTTGAATTCAAGGGAAACTCTTAAGACAAATCATAGTAGTGGTCATAATAGTTGTGCAAATTCAGGAAATAATTCACCAACTCACCCAACAAAGGTGAATGGAGCAGCAAAAGATGCTAGCACAATTGATTACTCAACATGTAGAATAGATCAAGTTTCTAAAACTGATGCAAAGTTTACAAGTAAATCTAATAGACCTCATAAATTAGCACCATCAACCAGAAACATTTCTGATTTCCATACACAAAGTCCTAGAACAAAGAAGCCTTCAAATTTTGACTCAGCAATTACCTCACCAGGACTTCAAGCAGAGGCTGCTAAGGGAATGTCCACTCATTCGAAGAACACCACCGATCAAGGCCCGGGGAGTGGCACTAGCTCTTGCAGCGACAGTTTAGAGAGCACCAGCGCGACCATTAGGCCACATACCGGTGGTGATGTAAGGTGGGATGCAATTAACATGGTTTTGAGGGGCGGCCCTCTGAATCTTAAAGATTTCAGGCTTCTCAAGCGCATCGGTTATGGAGACATCGGAAGTGTATATCTTGTGGAACTTAAAGGAACTAAGGCTCACTTTGCCATGAAAGTAATGGATAAAGCAGCACTTATCAGCAGAAATAAGCTTCTGAGAGCACAAACAGAAAGGGAGATTCTTGGACTCCTTGATCACCCTTTCTTGCCAACTTTATATTCTTACTTTGAAACTGATAAATTTTACTGTTTGGTTATGGAGTTCTGTACTGGAGGTGATCTTCATTCTCTTAGACAGAAGCAACCTAACAAGTGTTTCACTGAAGAAGCTGCAAGGTTTTATGCTTCAGAGATTTTGTTAGCTCTTGAGTACCTGCACATGCTTGGCATTGTATATAGAGACTTAAAACCTGAAAATCTTCTAGTCAGAGATGAAGGCCACATTATGCTCTCGGATTTCGATTTATCGCTTCGCTGTTCAGTTTGTCCTACCCTTGTCAAGTCTTCATCAGCTCATGTAAGCAATGGTAGTAGTGACTCTAGAGCCATGTTGGGCGAAGATCAAGCAGTGCAAACTTGTGCTCAATCATCAAACTTTTTCCCACGAATTTTGCCTTCAAAGAAGAACCGTAAGGCGAAATCAGATTTCGGCCTAATGGTTGGTGGAGTTCGCCTTCCCGAACTAATGGCAGAACCAACGAATGTGCGATCGATGTCATTTGTAGGGACACATGAATATCTTGCTCCTGAGATTATCAAAGGAGAGGGTCATGGTAGTGCAGTAGATTGGTGGACTTTTGGGATATTCTTGTATGAATTGTTGCATGGAACAACCCCTTTTAAGGGTGCAGGATATAAGGCCACACTTTTTAATGTTGTTGGGCAGCCACTAAGGTTCCCTGAAACTCCTCAAATCAGTGTCGTGGCTCGCGATCTTATAAGAGGATTGTTGGTGAAGGAACCTCAGAAGAGAATTGCATATAAAAGAGGTGCAACAGAAATAAAACAACACCCTTTTTTTGAAGGAGTGAATTGGGCTCTAGTTAGAAGTGCTACACCACCTCATATACCAGAACCTGTAAACTTTTCCAAATATGCTACCAAAGACAAAGACAAAGACACAACAGCAGCAACAACTGATAAGAACATTGCAGATATTGCTAATGATAAGAACAATAACAGTTCTACTGACTCTTACATAGATTTTGAGTATTTTTAG 1737 0.4111 MSSSKPVKMPDLPEMDLNSRETLKTNHSSGHNSCANSGNNSPTHPTKVNGAAKDASTIDYSTCRIDQVSKTDAKFTSKSNRPHKLAPSTRNISDFHTQSPRTKKPSNFDSAITSPGLQAEAAKGMSTHSKNTTDQGPGSGTSSCSDSLESTSATIRPHTGGDVRWDAINMVLRGGPLNLKDFRLLKRIGYGDIGSVYLVELKGTKAHFAMKVMDKAALISRNKLLRAQTEREILGLLDHPFLPTLYSYFETDKFYCLVMEFCTGGDLHSLRQKQPNKCFTEEAARFYASEILLALEYLHMLGIVYRDLKPENLLVRDEGHIMLSDFDLSLRCSVCPTLVKSSSAHVSNGSSDSRAMLGEDQAVQTCAQSSNFFPRILPSKKNRKAKSDFGLMVGGVRLPELMAEPTNVRSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLHGTTPFKGAGYKATLFNVVGQPLRFPETPQISVVARDLIRGLLVKEPQKRIAYKRGATEIKQHPFFEGVNWALVRSATPPHIPEPVNFSKYATKDKDKDTTAATTDKNIADIANDKNNNSSTDSYIDFEYF 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0533 578 CDD STKc_phototropin_like 180 532 - -
Lal20g0533 578 Pfam Protein kinase domain 400 513 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g0533 578 Pfam Protein kinase domain 183 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g0533 578 PANTHER FLIPPASE KINASE 1-RELATED 44 578 - -
Lal20g0533 578 Gene3D Transferase(Phosphotransferase) domain 1 388 531 - -
Lal20g0533 578 Gene3D Phosphorylase Kinase; domain 1 179 261 - -
Lal20g0533 578 MobiDBLite consensus disorder prediction 22 47 - -
Lal20g0533 578 PANTHER SERINE/THREONINE-PROTEIN KINASE AGC1-5 44 578 - -
Lal20g0533 578 ProSiteProfiles AGC-kinase C-terminal domain profile. 514 578 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lal20g0533 578 ProSitePatterns Serine/Threonine protein kinases active-site signature. 303 315 IPR008271 GO:0004672|GO:0006468
Lal20g0533 578 SMART serkin_6 182 513 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g0533 578 SUPERFAMILY Protein kinase-like (PK-like) 179 552 IPR011009 -
Lal20g0533 578 MobiDBLite consensus disorder prediction 69 156 - -
Lal20g0533 578 Gene3D Transferase(Phosphotransferase) domain 1 262 330 - -
Lal20g0533 578 MobiDBLite consensus disorder prediction 69 114 - -
Lal20g0533 578 MobiDBLite consensus disorder prediction 124 156 - -
Lal20g0533 578 ProSiteProfiles Protein kinase domain profile. 182 513 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g0533 578 MobiDBLite consensus disorder prediction 1 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0533 Lal-Chr20 4676785 4679157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0533 85 578 AGC Kinase Gene Family AT1G79250 67.255 0.0 673
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Lal20g0533 Pkinase 2.2e-37 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0533 20 4676785 4679157 Lal20g0533 20 4676785 4679157 ECH