Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0516 ATGGCTCCAATGAGTCTCCCACCTGGGTTTAGGTTCCACCCTACAGATGAAGAACTTGTTGCATACTACTTAGAAAGAAAAATAACAGGACGTTCAATAGAGCTTGATATTATTGCAGAAGTTGATCTATACAAATGTGAACCATGGGATTTACCAGATAAGTCATTCTTGCCTAGCAAAGACATGGAGTGGTATTTTTACAGTCCAAGAGATAGAAAGTACCCAAATGGGTCAAGAACTAATAGAGCAACAAGAGCTGGTTATTGGAAAGCTACAGGAAAAGATAGAGCAGTTCATTCTCAAAAGCAACAAGTTGGTATGAAGAAGACATTAGTGTATTACAGAGGTAGAGCACCACATGGTGTTAGAACCAACTGGGTTATGCATGAGTATCGCTTACTTGATTCACTTCCTGCTACATCTCATTCATCTTTGAAGGATTCGTATTCATTGTGTCGAATTTTCAAGAAGACAATTCAAATTCCAACAAAACCAAAAGAAGATGAACAAGCTAACAATGATGCAAAAAACGATTTAATGTGGGTTTCAGAAGAACAAGTATTAAGAAAAGAATCAAGTGGCATTGATGTTTCAAGAGAAATGGAAATCATAGATGAGAAAATTCTCAATCACCATGAACAATATCCTAAATTTCCATGTGACGCTTCATCTTCTGATCTAACTCAAGGAACATGTACACCCACTGAAACATGTATAGGAGATGATTTTCAAGCACAATTTGTTTGTGATGAAGCAAATAGTGCAGCTAATTCATACTCAATGGGAATAGGATACCCTTCAAATCTATTTCAGGATATAGAAATACCTATGTGTGGAGGCATGCATTATAATTTTTCACACACACCTTTGGTGATGGAAGATTTCCCACAAATAAATTTAGCAGAGACAAAATCAATGAAGCCAGAAATGATTGGTGATTGCTTGTTATATGACAGATACAAGGACTGTATGACTGGAACACTAGAAGAAATCATCTCTTTGTGTTCCTCTCAGGATAATTCTGTTGCTTTGCCCATGCTATAA 1044 0.3659 MAPMSLPPGFRFHPTDEELVAYYLERKITGRSIELDIIAEVDLYKCEPWDLPDKSFLPSKDMEWYFYSPRDRKYPNGSRTNRATRAGYWKATGKDRAVHSQKQQVGMKKTLVYYRGRAPHGVRTNWVMHEYRLLDSLPATSHSSLKDSYSLCRIFKKTIQIPTKPKEDEQANNDAKNDLMWVSEEQVLRKESSGIDVSREMEIIDEKILNHHEQYPKFPCDASSSDLTQGTCTPTETCIGDDFQAQFVCDEANSAANSYSMGIGYPSNLFQDIEIPMCGGMHYNFSHTPLVMEDFPQINLAETKSMKPEMIGDCLLYDRYKDCMTGTLEEIISLCSSQDNSVALPML 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0516 347 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
Lal20g0516 347 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 1 168 - -
Lal20g0516 347 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
Lal20g0516 347 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 168 - -
Lal20g0516 347 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Lal20g0516 347 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0516 Lal-Chr20 4412300 4416682 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0516 1 333 NAC Transcription Factor Family AT1G54330 51.786 6.08e-99 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lal20g0516 NAM 4.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0516 - - gmx:100808325 595.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0516 20 4412300 4416682 Lal20g0516 20 4412300 4416682 ECH